Miyakogusa Predicted Gene
- Lj0g3v0198599.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0198599.2 CUFF.12584.2
(71 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 140 2e-34
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 68 1e-12
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 68 1e-12
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 68 1e-12
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 67 3e-12
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 67 3e-12
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 67 3e-12
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 66 5e-12
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 66 5e-12
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 60 3e-10
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 58 1e-09
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 57 2e-09
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 54 3e-08
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 54 3e-08
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 54 3e-08
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 54 3e-08
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 54 3e-08
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 53 3e-08
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 52 7e-08
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 52 7e-08
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 50 3e-07
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 49 7e-07
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 46 6e-06
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/70 (92%), Positives = 69/70 (98%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDV 60
MDEAHALKDKNS+RWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFM+PDIF +E+V
Sbjct: 352 MDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDIFTTENV 411
Query: 61 DLKKLLNAED 70
DLKKLLNAED
Sbjct: 412 DLKKLLNAED 421
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASED 59
+DEA A+K +S RWK L+S N RL+LTGTP+QN++ ELW+LL F+MP +F + D
Sbjct: 719 LDEAQAIKSSSSIRWKTLLSF--NCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHD 775
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASED 59
+DEA A+K +S RWK L+S N RL+LTGTP+QN++ ELW+LL F+MP +F + D
Sbjct: 752 LDEAQAIKSSSSIRWKTLLSF--NCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHD 808
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 44/57 (77%), Gaps = 2/57 (3%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFAS 57
+DEAH +K+ S RW+ L++ N+ +R++LTGTPLQNDL ELWSL+ F+MP +F S
Sbjct: 663 LDEAHLIKNWKSQRWQTLLNF--NSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQS 717
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 45/60 (75%), Gaps = 2/60 (3%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDV 60
+DEAH +K++NS K + + N RL++TGTPLQN+LHELW+LL F++P+IF+S +
Sbjct: 316 IDEAHRIKNENSLLSKTMRLFS--TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAET 373
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 45/60 (75%), Gaps = 2/60 (3%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDV 60
+DEAH +K++NS K + + N RL++TGTPLQN+LHELW+LL F++P+IF+S +
Sbjct: 316 IDEAHRIKNENSLLSKTMRLFS--TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAET 373
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 45/60 (75%), Gaps = 2/60 (3%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDV 60
+DEAH +K++NS K + + N RL++TGTPLQN+LHELW+LL F++P+IF+S +
Sbjct: 316 IDEAHRIKNENSLLSKTMRLFS--TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAET 373
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 45/60 (75%), Gaps = 2/60 (3%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDV 60
+DEAH +K++NS K + + N RL++TGTPLQN+LHELW+LL F++P++F+S +
Sbjct: 321 IDEAHRIKNENSLLSKTMRLFS--TNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAET 378
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 45/60 (75%), Gaps = 2/60 (3%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDV 60
+DEAH +K++NS K + + N RL++TGTPLQN+LHELW+LL F++P++F+S +
Sbjct: 321 IDEAHRIKNENSLLSKTMRLFS--TNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAET 378
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFAS 57
+DE H LK+ S K L++ R +RL+LTGTP+QN L ELWSLL F++P IF S
Sbjct: 530 VDEGHRLKNHESALAKTLLTGYR-IKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNS 585
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASED 59
+DE H LK+ + L + + +L+LTGTPLQN+L ELWSLL F++PDIF S D
Sbjct: 332 IDEGHRLKNHKCKLLRELKHL--KMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHD 388
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFAS 57
+DE H LK+ K L + R +RL+LTGTP+QN L ELWSLL F++P IF S
Sbjct: 512 VDEGHRLKNHECALAKTLGTGYR-IKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNS 567
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFA 56
+DE H +K+ N+ R K+L+ + ++ R++++GTP+QN+L ELW+L F P +
Sbjct: 514 LDEGHLIKNPNTQRAKSLLEIP--SSHRIIISGTPIQNNLKELWALFNFSCPGLLG 567
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIF-ASED 59
+DE H +K+ + +L ++ RL+LTGTPLQN+L ELW+LL F++P+IF +SED
Sbjct: 883 IDEGHRIKNASCKLNADLKHYV--SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSED 940
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIF-ASED 59
+DE H +K+ + +L ++ RL+LTGTPLQN+L ELW+LL F++P+IF +SED
Sbjct: 883 IDEGHRIKNASCKLNADLKHYV--SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSED 940
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIF-ASED 59
+DE H +K+ + +L ++ RL+LTGTPLQN+L ELW+LL F++P+IF +SED
Sbjct: 883 IDEGHRIKNASCKLNADLKHYV--SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSED 940
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 7/62 (11%)
Query: 1 MDEAHALKDKNSFRWKNLMS---VARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFAS 57
+DEA LK+ NS + L+ + R RL++TGTP+QN+L ELW+L+ F MP +F +
Sbjct: 182 IDEAQRLKNPNSVLYNVLLEQFLIPR----RLLITGTPIQNNLTELWALMHFCMPLVFGT 237
Query: 58 ED 59
D
Sbjct: 238 LD 239
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 7/62 (11%)
Query: 1 MDEAHALKDKNSFRWKNLMS---VARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFAS 57
+DEA LK+ NS + L+ + R RL++TGTP+QN+L ELW+L+ F MP +F +
Sbjct: 188 IDEAQRLKNPNSVLYNVLLEQFLIPR----RLLITGTPIQNNLTELWALMHFCMPLVFGT 243
Query: 58 ED 59
D
Sbjct: 244 LD 245
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 1 MDEAHALKDKNSFRWKNLMSVAR-NANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASE 58
+DE H +K+ S K +V + A RL+L+GTP+QN++ ELWSL +F+MP +E
Sbjct: 1614 LDEGHIIKNAKS---KITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTE 1669
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 1 MDEAHALKDKNSFRWKNLMSVAR-NANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASE 58
+DE H +K+ S K +V + A RL+L+GTP+QN++ ELWSL +F+MP +E
Sbjct: 1583 LDEGHIIKNAKS---KITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTE 1638
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASED 59
+DEAH LK+ + + L+ + +L++TGTPLQN + ELW+LL F+ P F ++D
Sbjct: 759 VDEAHRLKNSEAQLYTALLEFS--TKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKD 815
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFAS 57
+DE H LK+K+S + +L + +N R++LTGTPLQN+L EL+ L+ F+ F S
Sbjct: 421 VDEGHRLKNKDSKLFSSLTQYS--SNHRILLTGTPLQNNLDELFMLMHFLDAGKFGS 475
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 1 MDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFM 50
+DEAH +K NS +L + A A++R LTGTP+QN+L +L+SLL F+
Sbjct: 572 LDEAHTIK--NSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFL 619