Miyakogusa Predicted Gene

Lj0g3v0198019.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0198019.1 Non Chatacterized Hit- tr|I1LAD8|I1LAD8_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,42.44,3e-19,F_box_assoc_1: F-box protein interaction domain,F-box
associated interaction domain; FBA_1,F-box ass,CUFF.12560.1
         (189 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    53   1e-07

>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)

Query: 26  HSGDRIPGLLFNEAIHWLAYDRDKLVNVIIAFDLIEKAFLEIPRPG---DLVHDFS-FCK 81
           + G    G+ FN AIHW+  +      V++AFD+  + F E+P P    D  H FS F  
Sbjct: 261 NDGSYTSGVHFNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVV 320

Query: 82  LWVHGNFLSLSVVSENNTLEIWVMEKYKVQSSWTKSLVLSLSGSAWHFPICSTKGGNIVM 141
             ++G    ++   + +  +IWVM +Y    SW++  +  L  S    P+CSTK    V+
Sbjct: 321 GSLNGRLCVVNSCYDVHD-DIWVMSEYGEAKSWSRIRINLLYRSMK--PLCSTKNDEEVL 377

Query: 142 CDISSD 147
            ++  D
Sbjct: 378 LELDGD 383