Miyakogusa Predicted Gene

Lj0g3v0197329.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0197329.1 tr|Q8GZD1|Q8GZD1_LOTJA Chloroplast biogenesis
protein OS=Lotus japonicus GN=CCDA PE=2 SV=1,98.54,0,DsbD,Cytochrome c
assembly protein, transmembrane domain; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.12489.1
         (343 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54290.2 | Symbols: CcdA | cytochrome c biogenesis protein fa...   390   e-109
AT5G54290.1 | Symbols: CcdA | cytochrome c biogenesis protein fa...   390   e-109

>AT5G54290.2 | Symbols: CcdA | cytochrome c biogenesis protein
           family | chr5:22051097-22053923 FORWARD LENGTH=355
          Length = 355

 Score =  390 bits (1003), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/339 (65%), Positives = 248/339 (73%), Gaps = 15/339 (4%)

Query: 19  ANCNLDRHGRHVVPINVHKKASEPENCLQSD------WKSNGNNIRTFIGAMTAANLVXX 72
           ++C L+   +  V    H +  E E  L SD       +S    +      +  ANLV  
Sbjct: 18  SSCRLNHGKKRWVRAGKHCEL-ERERSLVSDAVSLERLESKSIKLAMLASGLGVANLVTL 76

Query: 73  XXXXXX--------XXXSFYDLADGSINDWFGGILYSAGQQANEAVLDQLSSLSFTSLAV 124
                            S Y LA+GS+ D  G  LYSA QQANEAV DQLS+LS TSLAV
Sbjct: 77  SSAKAADLKMIVLDQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQLSALSVTSLAV 136

Query: 125 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVIGDSIXXXXXXXXXXXXXXXXXX 184
           IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR +VIGD++                  
Sbjct: 137 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLATTLALLGIVAS 196

Query: 185 FAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDSFDPRSVAANLPSSVQAYL 244
           FAGKAYGQIGQGLP+AASGLA++MGLNLLEIIELQLPSFF++FDPR+ AAN PSSVQAYL
Sbjct: 197 FAGKAYGQIGQGLPVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAAANFPSSVQAYL 256

Query: 245 AGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQS 304
           AGLTFALAASPCSTPVLATLLGYVA S+DPVIGGSLLLTYTTGY+APL++AASFAGALQS
Sbjct: 257 AGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGALQS 316

Query: 305 LLSFRKYSAWINPISGAMLLGGGVYTFLDKLFPATTMAM 343
           LLS RK SAWINPISGA+LLGGG+YTFLD+LFPA TM M
Sbjct: 317 LLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 355


>AT5G54290.1 | Symbols: CcdA | cytochrome c biogenesis protein
           family | chr5:22051097-22053923 FORWARD LENGTH=354
          Length = 354

 Score =  390 bits (1002), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/339 (65%), Positives = 249/339 (73%), Gaps = 16/339 (4%)

Query: 19  ANCNLDRHGRHVVPINVHKKASEPENCLQSD------WKSNGNNIRTFIGAMTAANLVXX 72
           ++C L+ H +  V    H +  E E  L SD       +S    +      +  ANLV  
Sbjct: 18  SSCRLN-HEKRWVRAGKHCEL-ERERSLVSDAVSLERLESKSIKLAMLASGLGVANLVTL 75

Query: 73  XXXXXX--------XXXSFYDLADGSINDWFGGILYSAGQQANEAVLDQLSSLSFTSLAV 124
                            S Y LA+GS+ D  G  LYSA QQANEAV DQLS+LS TSLAV
Sbjct: 76  SSAKAADLKMIVLDQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQLSALSVTSLAV 135

Query: 125 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVIGDSIXXXXXXXXXXXXXXXXXX 184
           IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR +VIGD++                  
Sbjct: 136 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLATTLALLGIVAS 195

Query: 185 FAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDSFDPRSVAANLPSSVQAYL 244
           FAGKAYGQIGQGLP+AASGLA++MGLNLLEIIELQLPSFF++FDPR+ AAN PSSVQAYL
Sbjct: 196 FAGKAYGQIGQGLPVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAAANFPSSVQAYL 255

Query: 245 AGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQS 304
           AGLTFALAASPCSTPVLATLLGYVA S+DPVIGGSLLLTYTTGY+APL++AASFAGALQS
Sbjct: 256 AGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGALQS 315

Query: 305 LLSFRKYSAWINPISGAMLLGGGVYTFLDKLFPATTMAM 343
           LLS RK SAWINPISGA+LLGGG+YTFLD+LFPA TM M
Sbjct: 316 LLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 354