Miyakogusa Predicted Gene

Lj0g3v0197309.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0197309.1 tr|D4P3E6|D4P3E6_WHEAT ARF GTPase activator
(Fragment) OS=Triticum aestivum PE=2
SV=1,54.78,3e-19,seg,NULL,CUFF.12543.1
         (185 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54310.1 | Symbols: NEV, AGD5 | ARF-GAP domain 5 | chr5:22057...    81   3e-16

>AT5G54310.1 | Symbols: NEV, AGD5 | ARF-GAP domain 5 |
           chr5:22057262-22061066 REVERSE LENGTH=483
          Length = 483

 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 60/99 (60%), Gaps = 8/99 (8%)

Query: 1   MLSMDDPSEKSS--GPADATADDNNWAGFQSAA--ETSXXXXXXXXXXXXXXXRPTSGIE 56
           MLSMDD +  +S   P D  ADDN+WAGFQSA   +T+                 +S  E
Sbjct: 235 MLSMDDSTTNTSEATPGDTPADDNSWAGFQSAGSGQTAEKIVTAKPAESSSPPASSSDFE 294

Query: 57  DLFKDSPSITPSLASEKPQKDVKNDIMSLFEKTNMVSPF 95
           DLFKD    TP+L +++  KDVK DIMSLFEKTN+VSPF
Sbjct: 295 DLFKD----TPNLTTQQAPKDVKGDIMSLFEKTNIVSPF 329