Miyakogusa Predicted Gene

Lj0g3v0196789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0196789.1 Non Chatacterized Hit- tr|I1KE45|I1KE45_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.52838 PE,69.49,2e-17,
,CUFF.12465.1
         (77 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13677.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    76   4e-15
AT3G13677.1 | Symbols:  | unknown protein; Has 24 Blast hits to ...    58   1e-09

>AT3G13677.2 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN:
          cellular_component unknown; Has 24 Blast hits to 24
          proteins in 11 species: Archae - 0; Bacteria - 0;
          Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other
          Eukaryotes - 0 (source: NCBI BLink). |
          chr3:4476296-4476611 FORWARD LENGTH=76
          Length = 76

 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 48/60 (80%)

Query: 18 CERKQAAVHEELRRMNQLPAHSIYVVHRLKVLNKILQLMSIQRTASQEEELEQLFAGLSL 77
          C+ K + + EE++R+ +LP++S+Y VHRLKVLNKI  L+S+QRT SQE+ELE LF  LSL
Sbjct: 17 CDEKSSVIQEEIKRVCKLPSNSVYAVHRLKVLNKINDLLSVQRTLSQEKELELLFTQLSL 76


>AT3G13677.1 | Symbols:  | unknown protein; Has 24 Blast hits to
          24 proteins in 11 species: Archae - 0; Bacteria - 0;
          Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other
          Eukaryotes - 0 (source: NCBI BLink). |
          chr3:4476296-4477092 FORWARD LENGTH=171
          Length = 171

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 37/48 (77%)

Query: 18 CERKQAAVHEELRRMNQLPAHSIYVVHRLKVLNKILQLMSIQRTASQE 65
          C+ K + + EE++R+ +LP++S+Y VHRLKVLNKI  L+S+Q   S+E
Sbjct: 17 CDEKSSVIQEEIKRVCKLPSNSVYAVHRLKVLNKINDLLSVQNIVSRE 64