Miyakogusa Predicted Gene

Lj0g3v0196679.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0196679.1 Non Chatacterized Hit- tr|B9R6Y6|B9R6Y6_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,45.36,3e-19,seg,NULL,CUFF.12459.1
         (180 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33800.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...    58   4e-09
AT1G58460.1 | Symbols:  | unknown protein; Has 35 Blast hits to ...    49   3e-06

>AT4G33800.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:16210404-16211307 REVERSE LENGTH=170
          Length = 170

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 76/173 (43%), Gaps = 34/173 (19%)

Query: 10  SASESGWTHYFDQ------PSL--------SEKHFQRSGIVEYKGMXXXXXXXDLSMVSD 55
           S  ESGWT Y DQ      PS         S +  + S    Y          DLSM+SD
Sbjct: 6   SGCESGWTLYLDQSVSSPSPSCFRDSNGFDSRRRSKDSWDQNYVHQEEEEEEDDLSMISD 65

Query: 56  ASSGPPHYHEEDD--QIQSYGLNWYPSSSLYTKESVKKQKVKEYGRIQQPSPLEFDDTAS 113
           ASSGP +  EED   +I   GL          K+  +++K ++Y ++        DDTAS
Sbjct: 66  ASSGPRNISEEDSVKKINIVGLK---------KQCKREKKRRDYEKMNSL----LDDTAS 112

Query: 114 SPVLNCHKANKQASFSGNGAV----EDALDFSPCFSATRTKRKPKFQKHFSFF 162
           SP+ N      Q S  GN       E  LD+S  FSAT+ + K  FQ+   + 
Sbjct: 113 SPLFN-FPHMLQKSVGGNKIEQTFPESTLDYSQGFSATQFQDKTAFQEQCGYL 164


>AT1G58460.1 | Symbols:  | unknown protein; Has 35 Blast hits to 35
           proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 35; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:21721404-21722429 FORWARD LENGTH=177
          Length = 177

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 84/188 (44%), Gaps = 20/188 (10%)

Query: 1   MDMSSSQYNSASESGWTHYFDQPS-LSEKHFQRSGIVEYKGMXXXXXXXDLSMVSDASSG 59
           MD S   Y+ A +SGWT Y    S +S  HF       + G        D SMVSDASSG
Sbjct: 1   MDFSDLDYSDAGDSGWTMYLGHSSSVSLHHFDY-----HNGETKQEHDEDSSMVSDASSG 55

Query: 60  PPHYHEE---DDQIQSYGLNWYPSSSLYTKESVKKQKVKEYGRIQQPSPLEFDDTASS-P 115
           PP+Y EE   +D +Q     W    S    ++  K+KV E     +     FDDTASS P
Sbjct: 56  PPYYCEETVHEDHLQQNTQYW--CKSKSKNKNKNKKKVHEEQGYSERFNSSFDDTASSLP 113

Query: 116 VLNCHKANKQASFSGNGAVEDALDFSPCFSATRTKRKPKFQKHF---SFFGGKQASEGPG 172
           V     A+KQ         +   DF   +S TR   K K    F   +F   K A +  G
Sbjct: 114 VGEEVSAHKQH----QNQYQRFHDFCQSYS-TRRICKEKVNSGFLQQAFPVDKLALDNQG 168

Query: 173 GFDEDERK 180
           G ++ +R+
Sbjct: 169 GDNQRKRR 176