Miyakogusa Predicted Gene

Lj0g3v0196649.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0196649.1 tr|G7I715|G7I715_MEDTR
UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter
OS=Medicago trunc,63.86,1e-18, ,CUFF.12455.1
         (90 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32272.1 | Symbols:  | Nucleotide/sugar transporter family pr...    86   5e-18
AT4G32272.2 | Symbols:  | Nucleotide/sugar transporter family pr...    77   3e-15

>AT4G32272.1 | Symbols:  | Nucleotide/sugar transporter family
          protein | chr4:15577195-15579689 REVERSE LENGTH=344
          Length = 344

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 57/79 (72%), Gaps = 8/79 (10%)

Query: 11 DNLTLPVSDPP----NDDDRERLLKGNDSIFRGSTRRERGGVYAAISYMSCAVLLVMFNK 66
          +N  LPVSDPP    ND D + +   +D +F+GS   +RG  YAA+SYM+CAV+LV+FNK
Sbjct: 3  NNPVLPVSDPPLAGENDSDGKGV---DDRLFKGSAMTKRGA-YAALSYMACAVMLVLFNK 58

Query: 67 AALSSYHFPSANVITLLQV 85
          AALSSY FP  NVITL Q+
Sbjct: 59 AALSSYDFPCVNVITLFQM 77


>AT4G32272.2 | Symbols:  | Nucleotide/sugar transporter family
          protein | chr4:15577195-15579689 REVERSE LENGTH=359
          Length = 359

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 57/94 (60%), Gaps = 23/94 (24%)

Query: 11 DNLTLPVSDPP----NDDDRERLLKGNDSIFRGSTRRERGGVYAAISYMSCAVL------ 60
          +N  LPVSDPP    ND D + +   +D +F+GS   +RG  YAA+SYM+CAVL      
Sbjct: 3  NNPVLPVSDPPLAGENDSDGKGV---DDRLFKGSAMTKRGA-YAALSYMACAVLVFSRIR 58

Query: 61 ---------LVMFNKAALSSYHFPSANVITLLQV 85
                   LV+FNKAALSSY FP  NVITL Q+
Sbjct: 59 FSGFRSSFMLVLFNKAALSSYDFPCVNVITLFQM 92