Miyakogusa Predicted Gene

Lj0g3v0196519.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0196519.1 Non Chatacterized Hit- tr|C5Y0T2|C5Y0T2_SORBI
Putative uncharacterized protein Sb04g031370
OS=Sorghu,34.97,9e-19,seg,NULL,CUFF.12438.1
         (308 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44600.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   158   4e-39
AT3G60200.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   144   6e-35

>AT2G44600.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT3G60200.1); Has 56 Blast hits to 55
           proteins in 11 species: Archae - 0; Bacteria - 0;
           Metazoa - 2; Fungi - 0; Plants - 52; Viruses - 0; Other
           Eukaryotes - 2 (source: NCBI BLink). |
           chr2:18408845-18409786 FORWARD LENGTH=313
          Length = 313

 Score =  158 bits (400), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 129/329 (39%), Positives = 162/329 (49%), Gaps = 37/329 (11%)

Query: 1   MRCKKHISDSSSTVGVCATCLRERLTFLIXXXXXXXXXLSRDCSRNSDVNPPPPLIFPRS 60
           MRCK+H  D SS++GVCA+CLRERL F +            D  R+S ++ PPPL+FPRS
Sbjct: 1   MRCKRHTVDFSSSIGVCASCLRERL-FTLAVSTAASENDDND-HRHSRIS-PPPLLFPRS 57

Query: 61  VSPYVSRRKSDYSAPGACHHSGDRRENRENLFYSTPQVGPSFYTGANAGEEARSIKKRLS 120
           VSPYV+ RKSD           D   +  N F++TPQV     +     E  RS KK+ S
Sbjct: 58  VSPYVAPRKSDAGTGTG-AGGRDSVASSNNRFFATPQVVVQSSSSEKVFESDRSFKKKKS 116

Query: 121 KFWSFSNFFKHRSEKFRP-----DPS--LEQPSTATASPSWFSNFFPXXXXXXXXXXX-- 171
               FS+FF+ RS+ +       D S    QPS+AT S SWFS                 
Sbjct: 117 GLSRFSSFFRTRSDDYDSRRDSCDASTVFSQPSSATTSRSWFSKVISVRSKKQSTTNTCY 176

Query: 172 -----XXXXXXXXXXXYRPTD---RGMSPVRIEDSPDECDQCDSSETSPW-WRRTPSRLV 222
                            RP     RGMSP     + DE     S E SP   RRTP  ++
Sbjct: 177 IEDLIASESDHHHHNQNRPRQRYCRGMSPAGDSTTNDE-----SVEESPGRLRRTP--VM 229

Query: 223 VAPSARRS-RVGRGMNVTGLDIAFCLSPLVRASPN--RRWNNKGMPPEIXXXXXXXXXXT 279
             P  +++  +G G +V+G+  AFCLSPLVRA PN    W  K  PP+            
Sbjct: 230 GTPGRKKTATIGIGRSVSGM--AFCLSPLVRAKPNCSSNWKAK-FPPDFGYSGELKSPA- 285

Query: 280 PKPHLSAAASFCANRSRKLVDFGRVNQNR 308
            KPHLS AASFC NRS+KLVD GRV+  R
Sbjct: 286 -KPHLSTAASFCGNRSKKLVDLGRVDHRR 313


>AT3G60200.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G44600.1); Has 60 Blast hits to 60 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi
           - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1
           (source: NCBI BLink). | chr3:22249320-22250237 FORWARD
           LENGTH=305
          Length = 305

 Score =  144 bits (364), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 118/320 (36%), Positives = 155/320 (48%), Gaps = 27/320 (8%)

Query: 1   MRCKKHISDSSSTVGVCATCLRERLTFLIXXXXXXXXXLSRDCSRNSDVNPPPPLIFPRS 60
           MRCK+H  D SS+ GVCA+CLRERL  L                ++++ N PP LIFPRS
Sbjct: 1   MRCKRHTVDLSSSNGVCASCLRERLLSLAASAAVSAAVEDNQSKKSNNNNHPPLLIFPRS 60

Query: 61  VSPYVSRRKSDYSAPGACHHSGDRRENRENLFYSTPQVGPSFYTGANAGEEARSIKKRLS 120
           VSPYV+RRKSD  A G     GD   +    F +TPQ+    Y+  +      +  K+  
Sbjct: 61  VSPYVTRRKSDAGAGG-----GDPLVSSNRRFITTPQIDLVGYSCKDFESNRSNKSKQGK 115

Query: 121 KFWSFSNFFKHRSEKFRPDPSLEQPSTATASPSWFSNFFPXXXXXXXXXXXXXXXXXXXX 180
           K   FSN F+ RSE F  +P    P  ++   S  S+                       
Sbjct: 116 KVSRFSNLFRARSEDFDTNPKSNNPRFSSCDASEISSSSSSSRSWISTILSTGRRKKQPT 175

Query: 181 XXYRPTD------------RGMSPVRIEDSPDECDQCDSSETSPWWRRTPSRLVVAPSAR 228
                 D            RGMSPVR +  P++     S+E+    RRTP+     P  R
Sbjct: 176 TACYIEDVIAARRPQRIYCRGMSPVR-DTEPEQ-----SAESIEELRRTPA--TKTPGRR 227

Query: 229 RSRVGRGMNVTGLDIAFCLSPLVRASPNRRWNNKGMPPEIXXXXXXXXXXTPKPHLSAAA 288
           +  +G G +++G+  AFCLSPLVRASPN  +  K   P              KPH+SAAA
Sbjct: 228 KIAMGIGKSMSGM--AFCLSPLVRASPNCPFKRKMRFPSEFGNSGEVTAVPEKPHISAAA 285

Query: 289 SFCANRSRKLVDFGRVNQNR 308
           SFCANRS+KLVD GRV++ R
Sbjct: 286 SFCANRSKKLVDLGRVDRRR 305