Miyakogusa Predicted Gene

Lj0g3v0196209.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0196209.1 Non Chatacterized Hit- tr|D7MHD8|D7MHD8_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,37.65,4e-18,seg,NULL,CUFF.12452.1
         (208 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13630.2 | Symbols:  | Protein of unknown function, DUF593 | ...    88   3e-18
AT4G13630.1 | Symbols:  | Protein of unknown function, DUF593 | ...    88   3e-18
AT4G13160.1 | Symbols:  | Protein of unknown function, DUF593 | ...    74   9e-14

>AT4G13630.2 | Symbols:  | Protein of unknown function, DUF593 |
           chr4:7934093-7936029 REVERSE LENGTH=569
          Length = 569

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 72/144 (50%), Gaps = 18/144 (12%)

Query: 1   MALPEIHSWTLGGLVGAFVDLAIAYFLLCGSAFAFFAYKLCMFFGLFLPCPCKGSFGYRN 60
           M   E+ SWT  GLV AF+DL++A+ LLC S   +   K    FGL LPCPC G +    
Sbjct: 1   MRCQEVKSWTFKGLVAAFIDLSVAFSLLCASFIVYVTSKFLGLFGLDLPCPCDGLYSE-- 58

Query: 61  SNFCVHKMLFEWPSRKICSIQVMAVRRFPFDVLWLKGHSCNANDKMVAQKMFDNRLVELE 120
              C  + L   P +KI S+Q     R PFD +   G           ++  + R V+LE
Sbjct: 59  ---CFQESLRNLPVKKISSVQRSVKNRTPFDSILYNGG---------KKRKCERRRVQLE 106

Query: 121 DEASCSSYASPRLVSFE-KENGYD 143
           DE S +   +P +  FE K +G+D
Sbjct: 107 DEVSST---TPSVGKFENKASGFD 127


>AT4G13630.1 | Symbols:  | Protein of unknown function, DUF593 |
           chr4:7934093-7936029 REVERSE LENGTH=569
          Length = 569

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 72/144 (50%), Gaps = 18/144 (12%)

Query: 1   MALPEIHSWTLGGLVGAFVDLAIAYFLLCGSAFAFFAYKLCMFFGLFLPCPCKGSFGYRN 60
           M   E+ SWT  GLV AF+DL++A+ LLC S   +   K    FGL LPCPC G +    
Sbjct: 1   MRCQEVKSWTFKGLVAAFIDLSVAFSLLCASFIVYVTSKFLGLFGLDLPCPCDGLYSE-- 58

Query: 61  SNFCVHKMLFEWPSRKICSIQVMAVRRFPFDVLWLKGHSCNANDKMVAQKMFDNRLVELE 120
              C  + L   P +KI S+Q     R PFD +   G           ++  + R V+LE
Sbjct: 59  ---CFQESLRNLPVKKISSVQRSVKNRTPFDSILYNGG---------KKRKCERRRVQLE 106

Query: 121 DEASCSSYASPRLVSFE-KENGYD 143
           DE S +   +P +  FE K +G+D
Sbjct: 107 DEVSST---TPSVGKFENKASGFD 127


>AT4G13160.1 | Symbols:  | Protein of unknown function, DUF593 |
          chr4:7653985-7654833 FORWARD LENGTH=282
          Length = 282

 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 9/89 (10%)

Query: 1  MALPEIHSWTLGGLVGAFVDLAIAYFLLCGSAFAFFAYKLCMFFGLFLPCPCKGSFGYRN 60
          M   E +  T  G++ AF++LA AY LLC SAF F   KL     LF+PC      GY+N
Sbjct: 1  MDYQESYRLTFYGILVAFMELAFAYCLLCVSAFVFITSKLL----LFMPC-----IGYQN 51

Query: 61 SNFCVHKMLFEWPSRKICSIQVMAVRRFP 89
          S+ C+ K+LF+WP R I  +Q +A    P
Sbjct: 52 SDLCIQKLLFDWPFRIILRVQKLATTNRP 80