Miyakogusa Predicted Gene
- Lj0g3v0196179.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0196179.1 tr|B9MUV9|B9MUV9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_676458 PE=4
SV=1,46.43,1e-18,MYB_LIKE,Myb-like domain; Myb_DNA-bind_4,NULL;
seg,NULL,CUFF.12417.1
(289 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24860.1 | Symbols: | Homeodomain-like superfamily protein |... 130 1e-30
AT2G44730.1 | Symbols: | Alcohol dehydrogenase transcription fa... 88 8e-18
AT3G58630.1 | Symbols: | sequence-specific DNA binding transcri... 69 4e-12
AT3G10030.1 | Symbols: | aspartate/glutamate/uridylate kinase f... 68 7e-12
AT3G10030.2 | Symbols: | aspartate/glutamate/uridylate kinase f... 68 9e-12
AT3G54390.1 | Symbols: | sequence-specific DNA binding transcri... 61 1e-09
AT3G14180.1 | Symbols: | sequence-specific DNA binding transcri... 58 6e-09
AT3G11100.1 | Symbols: | sequence-specific DNA binding transcri... 52 3e-07
AT5G05550.1 | Symbols: | sequence-specific DNA binding transcri... 50 2e-06
AT5G05550.2 | Symbols: | sequence-specific DNA binding transcri... 50 2e-06
AT4G17060.1 | Symbols: FIP2 | FRIGIDA interacting protein 2 | ch... 49 3e-06
>AT3G24860.1 | Symbols: | Homeodomain-like superfamily protein |
chr3:9073642-9074574 FORWARD LENGTH=310
Length = 310
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 128/267 (47%), Gaps = 21/267 (7%)
Query: 13 VKKPQPIPWTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSA 72
+K QP+ WT ET+ LI +Y+EKW+++ RGPL+S WEE+AV ++R G + +++
Sbjct: 57 ARKTQPVLWTQDETLLLIESYKEKWFAIGRGPLKSTHWEEIAVAASSRSGVE-----RTS 111
Query: 73 LQCRHKIEKLRQRHRAEKHRPA-TRPWQYFSLMDDLE-RGPLPISAHPLASLPPXXXXXX 130
QCRHKIEK+R+R R+E+ W +++ M++L+ P PISA PL LPP
Sbjct: 112 TQCRHKIEKMRKRFRSERQSMGPISIWPFYNQMEELDSSNPAPISARPLTRLPPNSNNRY 171
Query: 131 XXXXXXXXXXXXXXXXXXRVNYM---KSKSVNYILKQRSAPSAINATKNRAAFNVWXXXX 187
KS+S+NYIL++ P +N +
Sbjct: 172 VDDEEEDEEEDNNNYEEEEEEDERQSKSRSINYILRR---PGTVNRFAGVGGGLLSWGQK 228
Query: 188 XXXXXXXXXXXXXXXXXXXGLGMSESGLVLGLTEEIKAFGERFIGLENLKMEMMKETERF 247
G+ + EI+AF ER + +E K+E KET R
Sbjct: 229 ERSSKRKRNDGDGGERRRKGM--------RAVAAEIRAFAERVMVMEKKKIEFAKETVRL 280
Query: 248 RFEMEKKRMRMILESQRRVVDSIGRAF 274
R EME +R+ +I SQ +++ I AF
Sbjct: 281 RKEMEIRRINLIQSSQTQLLQFINNAF 307
>AT2G44730.1 | Symbols: | Alcohol dehydrogenase transcription
factor Myb/SANT-like family protein |
chr2:18437447-18438565 REVERSE LENGTH=372
Length = 372
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 62/101 (61%), Gaps = 9/101 (8%)
Query: 18 PIPWTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRH 77
P W+ +ET+ LI AY++KWY+L RG L++N WEEVA V A C K+A+QCRH
Sbjct: 61 PPCWSLEETIALIDAYRDKWYALNRGNLKANHWEEVAEAVGANCPDVILK--KTAVQCRH 118
Query: 78 KIEKLRQRHRAEKHRPATRP-------WQYFSLMDDLERGP 111
K+EKLR+R+R E R + P W +F M+ +E P
Sbjct: 119 KMEKLRKRYRTEIQRARSVPVARFISSWVHFKRMEAMENRP 159
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 219 LTEEIKAFGERFIGLENLKMEMMKETERFRFEMEKKRMRMILESQRRVVDSIGRAF 274
+ IK G+ + E +MEM +E E R + E KR +MILESQ+R+V++ ++
Sbjct: 301 IASAIKLLGDTLVRTEQTRMEMTREIEAMRMDTEMKRTKMILESQQRIVEAFAKSL 356
>AT3G58630.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr3:21683928-21685771 REVERSE
LENGTH=321
Length = 321
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 14/115 (12%)
Query: 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAAR---CGYDF----AHPSKSAL 73
W+ + T LI+A+ ++ L RG LR W+EVA V R G + + P ++ +
Sbjct: 26 WSEEATFTLIQAWGNRYVDLSRGNLRQKHWQEVANAVNDRHYNTGRNVSAAKSQPYRTDV 85
Query: 74 QCRHKIEKLRQRHRAEKHRPA-------TRPWQYFSLMDDLERGPLPISAHPLAS 121
QC+++I+ L+++++ EK R + PW +FS +DDL R P S++P ++
Sbjct: 86 QCKNRIDTLKKKYKVEKARVSESNPGAYISPWPFFSALDDLLRESFPTSSNPDST 140
>AT3G10030.1 | Symbols: | aspartate/glutamate/uridylate kinase
family protein | chr3:3092277-3094831 REVERSE LENGTH=542
Length = 542
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRHKIE 80
W+ L+ AY +K+ L RG LR WEEVA V+ RC SKS QC++KI+
Sbjct: 161 WSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVSERC----EKLSKSVEQCKNKID 216
Query: 81 KLRQRHRAEKHR-----PATRPWQYFSLMDDLERGPLPI 114
L++R++ E+HR A W +F M+D+ L +
Sbjct: 217 NLKKRYKLERHRMSSGGTAASHWPWFKKMEDIVGNSLAL 255
>AT3G10030.2 | Symbols: | aspartate/glutamate/uridylate kinase
family protein | chr3:3092618-3094831 REVERSE LENGTH=520
Length = 520
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRHKIE 80
W+ L+ AY +K+ L RG LR WEEVA V+ RC SKS QC++KI+
Sbjct: 161 WSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVSERC----EKLSKSVEQCKNKID 216
Query: 81 KLRQRHRAEKHR-----PATRPWQYFSLMDDLERGPLPI 114
L++R++ E+HR A W +F M+D+ L +
Sbjct: 217 NLKKRYKLERHRMSSGGTAASHWPWFKKMEDIVGNSLAL 255
>AT3G54390.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr3:20137912-20138863 REVERSE
LENGTH=296
Length = 296
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRHKIE 80
W+ L+ AY+ KW R L+ WE+VA V++R + K+ QC++KIE
Sbjct: 38 WSEGAVSTLLEAYESKWVLRNRAKLKGQDWEDVAKHVSSRATH--TKSPKTQTQCKNKIE 95
Query: 81 KLRQRHRAEKHRPATRPWQYFSLMDDLERGPLPISAHPLASLP 123
+++R+R+E W + +D L RG P P A LP
Sbjct: 96 SMKKRYRSESATADGSSWPLYPRLDHLLRGTQP-QPQPQAVLP 137
>AT3G14180.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr3:4707290-4708621 REVERSE
LENGTH=443
Length = 443
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRHKIE 80
W+ T LI A+ E++ L RG L+ W+EVA +V++R D+ K+ +QC+++I+
Sbjct: 84 WSEAATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVSSR--EDYGKIPKTDIQCKNRID 141
Query: 81 KLRQRHRAEKHRPATRP----WQYFSLMDDL 107
++++++ EK R A W +F +D L
Sbjct: 142 TVKKKYKQEKVRIANGGGRSRWVFFDKLDRL 172
>AT3G11100.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr3:3476490-3477320 REVERSE
LENGTH=249
Length = 249
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRHKIE 80
W+ T LI A+ +++ +L RG LR N W+EVA V + G P K+ +QC+++I+
Sbjct: 22 WSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVNSSHGN--GRP-KTDVQCKNRID 78
Query: 81 KLRQRHRAEKHRPATRPWQYFSLMDDL 107
L+++++ EK +P + W +F +D L
Sbjct: 79 TLKKKYKTEKAKPLSN-WCFFDRLDFL 104
>AT5G05550.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr5:1639344-1640550 REVERSE
LENGTH=246
Length = 246
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRHKIE 80
W+ + T L+ A+ ++ L G LR N W++VA V +R G + K+ LQC+++++
Sbjct: 24 WSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVNSRHGDN--SRKKTDLQCKNRVD 81
Query: 81 KLRQRHRAEKHRPATRPWQYFSLMDDL 107
L+++++ EK + + W++++ +D L
Sbjct: 82 TLKKKYKTEKAKLSPSTWRFYNRLDVL 108
>AT5G05550.2 | Symbols: | sequence-specific DNA binding
transcription factors | chr5:1639529-1640550 REVERSE
LENGTH=249
Length = 249
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFAHPSKSALQCRHKIE 80
W+ + T L+ A+ ++ L G LR N W++VA V +R G + K+ LQC+++++
Sbjct: 24 WSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVNSRHGDN--SRKKTDLQCKNRVD 81
Query: 81 KLRQRHRAEKHRPATRPWQYFSLMDDL 107
L+++++ EK + + W++++ +D L
Sbjct: 82 TLKKKYKTEKAKLSPSTWRFYNRLDVL 108
>AT4G17060.1 | Symbols: FIP2 | FRIGIDA interacting protein 2 |
chr4:9593721-9594653 REVERSE LENGTH=310
Length = 310
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 212 ESGLVLGLTEEIKAFGERFIGLENLKMEMMKETERFRFEMEKKRMRMILESQRRVVDSIG 271
ES + + +K E F+ +EN KMEMM+E E+ R EME K +M+LESQ++++ +
Sbjct: 235 ESDPIDEVVSSVKMLTEMFVRVENSKMEMMREMEKSRMEMELKHCQMMLESQQQIIGAFA 294
Query: 272 RAFGXXXXXKRMKITRPI 289
A K RP+
Sbjct: 295 EAL---SEKKSTNARRPV 309