Miyakogusa Predicted Gene

Lj0g3v0196139.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0196139.1 Non Chatacterized Hit- tr|I1N290|I1N290_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,61.57,0,SUBFAMILY NOT
NAMED,NULL; SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT
REGULATOR OF CHROMATIN S,CUFF.12412.1
         (752 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24880.1 | Symbols:  | Helicase/SANT-associated, DNA binding ...   157   2e-38
AT3G24870.1 | Symbols:  | Helicase/SANT-associated, DNA binding ...   154   3e-37
AT3G24870.2 | Symbols:  | Helicase/SANT-associated, DNA binding ...   154   3e-37
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi...    49   9e-06

>AT3G24880.1 | Symbols:  | Helicase/SANT-associated, DNA binding
           protein | chr3:9086457-9095537 REVERSE LENGTH=1957
          Length = 1957

 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/202 (44%), Positives = 117/202 (57%), Gaps = 22/202 (10%)

Query: 551 KSHWGFVLEEMTWLANDFAQERLWKITAAAQLGHRVAFTCRQRVEKLNKHLGVKTLSHRI 610
           KS W FVLEEM WLANDFAQERLWK+TAAAQ+ HRVA TC+ R E+ N+H  +K ++  +
Sbjct: 573 KSQWDFVLEEMAWLANDFAQERLWKMTAAAQICHRVALTCQLRFEERNQHRKLKKIASVL 632

Query: 611 SKAVMQFWHSAELLLDNDDPAINSIVGCVESAKVDANEASRDQKGNSYVDTSNFLEGLNP 670
           S A++QFW S E            + G +E   +   + +           SN L G   
Sbjct: 633 SNAILQFWSSVEA----------EVPGELEETSLGIVKET--------CQESNCLNGRRC 674

Query: 671 IKNSALKVHAYAIRLLKASRSQGISSQAEAPTTPEMIFDSGIVDISWKEHLTEESLFYEV 730
           +   A  V  YA R LK + S  IS  + AP+TP+ + D  I+DIS  + LTE SLFY V
Sbjct: 675 L---AAGVKEYASRFLKYNNS-SISYHSAAPSTPDNMCDPEILDISMVDQLTEASLFYSV 730

Query: 731 PPTAMEKYRISVESHLFQFEEN 752
           P  AME Y  S+ESHL + E++
Sbjct: 731 PSGAMEVYLKSIESHLTRCEKS 752


>AT3G24870.1 | Symbols:  | Helicase/SANT-associated, DNA binding
           protein | chr3:9075237-9084278 REVERSE LENGTH=1907
          Length = 1907

 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 117/202 (57%), Gaps = 22/202 (10%)

Query: 551 KSHWGFVLEEMTWLANDFAQERLWKITAAAQLGHRVAFTCRQRVEKLNKHLGVKTLSHRI 610
           KS W FVLEEM WLANDFAQERLWK+TAA Q+ HRVA TC+ R E+ N+H  +K ++  +
Sbjct: 573 KSQWDFVLEEMAWLANDFAQERLWKMTAATQICHRVALTCQLRFEERNQHRKLKKIASVL 632

Query: 611 SKAVMQFWHSAELLLDNDDPAINSIVGCVESAKVDANEASRDQKGNSYVDTSNFLEGLNP 670
           S A++QFW S E  +  +     + +G V+    ++N                    LN 
Sbjct: 633 SYAILQFWSSVEAEVPGE--LEETSLGIVKETCQESN-------------------CLNG 671

Query: 671 IKNSALKVHAYAIRLLKASRSQGISSQAEAPTTPEMIFDSGIVDISWKEHLTEESLFYEV 730
           I+  A  V  YA R LK + S  IS  + A +TP+ + D  I+DIS  + LTE SLFY V
Sbjct: 672 IRCLAAGVKEYASRFLKYNNS-SISYHSAALSTPDNMCDPEILDISMVDQLTEASLFYSV 730

Query: 731 PPTAMEKYRISVESHLFQFEEN 752
           P  AME Y  S+ESHL + E++
Sbjct: 731 PSGAMEVYLKSIESHLTRCEKS 752


>AT3G24870.2 | Symbols:  | Helicase/SANT-associated, DNA binding
           protein | chr3:9075237-9084278 REVERSE LENGTH=1899
          Length = 1899

 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 115/200 (57%), Gaps = 22/200 (11%)

Query: 551 KSHWGFVLEEMTWLANDFAQERLWKITAAAQLGHRVAFTCRQRVEKLNKHLGVKTLSHRI 610
           KS W FVLEEM WLANDFAQERLWK+TAA Q+ HRVA TC+ R E+ N+H  +K ++  +
Sbjct: 568 KSQWDFVLEEMAWLANDFAQERLWKMTAATQICHRVALTCQLRFEERNQHRKLKKIASVL 627

Query: 611 SKAVMQFWHSAELLLDNDDPAINSIVGCVESAKVDANEASRDQKGNSYVDTSNFLEGLNP 670
           S A++QFW S E  +  +     + +G V+    ++N                    LN 
Sbjct: 628 SYAILQFWSSVEAEVPGE--LEETSLGIVKETCQESN-------------------CLNG 666

Query: 671 IKNSALKVHAYAIRLLKASRSQGISSQAEAPTTPEMIFDSGIVDISWKEHLTEESLFYEV 730
           I+  A  V  YA R LK + S  IS  + A +TP+ + D  I+DIS  + LTE SLFY V
Sbjct: 667 IRCLAAGVKEYASRFLKYNNS-SISYHSAALSTPDNMCDPEILDISMVDQLTEASLFYSV 725

Query: 731 PPTAMEKYRISVESHLFQFE 750
           P  AME Y  S+ESHL + E
Sbjct: 726 PSGAMEVYLKSIESHLTRCE 745


>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
           protein / helicase domain-containing protein |
           chr3:4065636-4073992 FORWARD LENGTH=2055
          Length = 2055

 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 551 KSHWGFVLEEMTWLANDFAQERLWKITAAAQLGHRVAFTCRQRVEKLNKHLG-----VKT 605
           K+HW  VLEEM WL+ DF  ER WK+  A ++  R +     +  +  + L      ++ 
Sbjct: 45  KTHWDHVLEEMAWLSKDFESERKWKLAQAKKVALRASKGMLDQASREERKLKEEEQRLRK 104

Query: 606 LSHRISKAVMQFWHSAELLL 625
           ++  ISK + +FW   E L+
Sbjct: 105 VALNISKDMKKFWMKVEKLV 124