Miyakogusa Predicted Gene

Lj0g3v0196109.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0196109.1 Non Chatacterized Hit- tr|I1KF73|I1KF73_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,67.11,2e-18,DUF3774,Protein of unknown function wound-induced;
seg,NULL,CUFF.12404.1
         (105 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10270.1 | Symbols:  | Wound-responsive family protein | chr4...    69   7e-13
AT4G10265.1 | Symbols:  | Wound-responsive family protein | chr4...    68   1e-12

>AT4G10270.1 | Symbols:  | Wound-responsive family protein |
          chr4:6374805-6375077 FORWARD LENGTH=90
          Length = 90

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 37/45 (82%), Gaps = 1/45 (2%)

Query: 1  MSSASRAWTVAASVGVVEALKDQ-GLCRWNYALRSAQHHVKNHLR 44
          MSS S+AWTVA S+G VEALKDQ GLCRWNY LRS   H++N++R
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVR 45


>AT4G10265.1 | Symbols:  | Wound-responsive family protein |
          chr4:6373226-6373477 REVERSE LENGTH=83
          Length = 83

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 38/45 (84%), Gaps = 1/45 (2%)

Query: 1  MSSASRAWTVAASVGVVEALKDQ-GLCRWNYALRSAQHHVKNHLR 44
          MSSAS+ W VAAS+G VEALKDQ G+CRWNY +RSA  +++N+LR
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLR 45