Miyakogusa Predicted Gene

Lj0g3v0195659.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0195659.2 Non Chatacterized Hit- tr|G7LFF0|G7LFF0_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,76.47,0.00000000000008,seg,NULL,CUFF.12371.2
         (138 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30280.1 | Symbols: RDM4, DMS4 | RNA-directed DNA methylation...    55   2e-08

>AT2G30280.1 | Symbols: RDM4, DMS4 | RNA-directed DNA methylation
          4 | chr2:12909804-12911860 REVERSE LENGTH=346
          Length = 346

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 26/36 (72%)

Query: 26 QSPLDAFWLEINERPFNRPLQHFANLSITDSAPNGP 61
          QS LDAFWLEINERP  RP   F+ LSI+DS   GP
Sbjct: 28 QSLLDAFWLEINERPLKRPTLDFSKLSISDSGERGP 63



 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 32/47 (68%), Gaps = 5/47 (10%)

Query: 97  LEINERPLKRPLRDFANLSISDSAQK-----VKFNNKKVFMQHVETI 138
           LEINERPLKRP  DF+ LSISDS ++          KKV ++H+ET+
Sbjct: 36  LEINERPLKRPTLDFSKLSISDSGERGPSVAEDVKPKKVLVRHLETV 82