Miyakogusa Predicted Gene

Lj0g3v0195339.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0195339.2 Non Chatacterized Hit- tr|B9RMP7|B9RMP7_RICCO
Two-component sensor histidine kinase bacteria,
putati,31.3,5e-19,seg,NULL; no
description,Homeodomain-like,CUFF.12360.2
         (229 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67710.1 | Symbols: ARR11 | response regulator 11 | chr1:2537...    56   2e-08

>AT1G67710.1 | Symbols: ARR11 | response regulator 11 |
           chr1:25376994-25378905 REVERSE LENGTH=521
          Length = 521

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 28/37 (75%)

Query: 1   MNVPWLTREKIASHLQKYRLSLSRLQKDDEQNSSSKG 37
           MNVPWLTRE +ASHLQKYRL LSRL+K  E    S G
Sbjct: 228 MNVPWLTRENVASHLQKYRLYLSRLEKGKELKCYSGG 264