Miyakogusa Predicted Gene

Lj0g3v0195299.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0195299.1 Non Chatacterized Hit- tr|G7KBS3|G7KBS3_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,38.12,2e-16,ARID-like,ARID/BRIGHT DNA-binding domain;
HMG-box,High mobility group, superfamily;
ARID,ARID/BRIGHT,gene.g15127.t1.1
         (288 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76110.1 | Symbols:  | HMG (high mobility group) box protein ...    57   1e-08
AT1G55650.1 | Symbols:  | HMG (high mobility group) box protein ...    55   6e-08
AT1G04880.1 | Symbols:  | HMG (high mobility group) box protein ...    52   4e-07
AT3G13350.1 | Symbols:  | HMG (high mobility group) box protein ...    50   2e-06

>AT1G76110.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr1:28555287-28557465 REVERSE LENGTH=338
          Length = 338

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 40  DLYLFYLEVTKRGGYHQVDQEKKWGEVVSALKLEGSNAKLSAQVEMLYANLLYEFEQLYF 99
           DL++ Y+EVT+RGGY +V  EKKW EV    +   +    S  +   Y NLL+ +EQ++ 
Sbjct: 70  DLHVLYVEVTRRGGYEKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHL 129

Query: 100 Y 100
           +
Sbjct: 130 F 130


>AT1G55650.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr1:20796340-20798481 FORWARD LENGTH=337
          Length = 337

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 96/242 (39%), Gaps = 67/242 (27%)

Query: 8   TVLPSDKTHDSECFYKNLTALLESS----------GLSLILNDLYLFYLEVTKRGGYHQV 57
           ++L  D   + E F++ L    ESS          G SL   DL+  + EVT RGG  +V
Sbjct: 27  SMLYQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSL---DLHRLFNEVTSRGGLEKV 83

Query: 58  DQEKKWGEVVSALKLEGSNAKLSAQVEMLYANLLYEFEQLYFYRCP-------------- 103
            ++++  EV+ A   + +    +  +   Y  +L+EFE LY+++ P              
Sbjct: 84  IKDRRCKEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYFQAPLSTFWEKEKALKLL 143

Query: 104 --------------------TKQASTKAEGGYVEP-----------VLQPAPSNDKGRKK 132
                               T     K E GY+             +   +P   +G+KK
Sbjct: 144 IEKSANRDKDSQELKPGTVITGIIDGKFESGYLISTKVGSEKLKGMLYHISPETKRGKKK 203

Query: 133 RGGA-------PTGRRTAYQIFVKQECARLRACSEDSLDRTRFLRMAIDTWKNMSEIEKQ 185
              +       P  +RT Y  FV ++  R++A  E++  +    +   + W N+SE +++
Sbjct: 204 AKSSQGDSHKPPKRQRTGYNFFVAEQSVRIKA--ENAGQKVSSPKNFGNMWTNLSESDRK 261

Query: 186 PY 187
            Y
Sbjct: 262 VY 263


>AT1G04880.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr1:1376106-1378264 REVERSE LENGTH=448
          Length = 448

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 40  DLYLFYLEVTKRGGYHQVDQEKKWGEVVSALKLEGSNAKLSAQVEMLYANLLYEFEQLYF 99
           DL+  ++EVT RGG +++  E++W EV +      +    S  +   Y +LL  +EQ+YF
Sbjct: 61  DLHKLFVEVTSRGGINKILNERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYF 120

Query: 100 YRC-----PTKQASTKAEGGYVEPVLQPA 123
           +R      P    S  A   +++  ++P+
Sbjct: 121 FRSNGQIPPDSMQSPSARPCFIQGAIRPS 149


>AT3G13350.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr3:4335721-4337804 REVERSE LENGTH=319
          Length = 319

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 13  DKTHDSECFYKNLTALLESSGLSLILN-------DLYLFYLEVTKRGGYHQVDQEKKWGE 65
           D   +S  F++ L A L  +  +L +        DL+  ++EVT RGG  +V +++KW E
Sbjct: 38  DLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDRKWKE 97

Query: 66  VVSALKLEGSNAKLSAQVEMLYANLLYEFEQLYFYRCPT 104
           V+ A     +    S  +   Y   L++ E +Y+   P 
Sbjct: 98  VIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYLEKPV 136