Miyakogusa Predicted Gene

Lj0g3v0195229.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0195229.2 Non Chatacterized Hit- tr|D7UA24|D7UA24_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,86.33,0,PEPTIDE
CHAIN RELEASE FACTOR 2,Peptide chain release factor 2; PEPTIDE CHAIN
RELEASE FACTOR,NULL; co,CUFF.12338.2
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56350.1 | Symbols:  | Peptide chain release factor 2 | chr1:...   188   1e-48
AT5G36170.1 | Symbols: HCF109, ATPRFB | high chlorophyll fluores...    52   1e-07
AT5G36170.2 | Symbols: HCF109, ATPRFB | high chlorophyll fluores...    52   1e-07
AT5G36170.3 | Symbols: HCF109, ATPRFB | high chlorophyll fluores...    52   1e-07

>AT1G56350.1 | Symbols:  | Peptide chain release factor 2 |
           chr1:21094840-21097826 FORWARD LENGTH=482
          Length = 482

 Score =  188 bits (478), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 90/139 (64%), Positives = 101/139 (72%)

Query: 1   MLSAQLNKPDLWDDPVHAGKISREHGSLLGKMKEVNALERELLEHIEMIKLARDENDXXX 60
           +LSA+LNK DLWDDP HAGKISREHGSL GKMK V   ERELLEHI+M+KLA++END   
Sbjct: 144 VLSAELNKSDLWDDPTHAGKISREHGSLTGKMKGVMTFERELLEHIDMLKLAKEENDSEL 203

Query: 61  XXXXXXXXXDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWAAMVMQMYKSW 120
                    DMRR             ++D CSCYIEVQ GAGGTES DWAAMVM+MYK+W
Sbjct: 204 ESETLKALIDMRRVSKEKELEALLSADNDPCSCYIEVQAGAGGTESNDWAAMVMEMYKTW 263

Query: 121 AQRRGYKVTVVDEMPGEIA 139
           AQRR + VTVVDE PGEIA
Sbjct: 264 AQRRKFSVTVVDEAPGEIA 282


>AT5G36170.1 | Symbols: HCF109, ATPRFB | high chlorophyll
           fluorescent 109 | chr5:14236083-14237974 REVERSE
           LENGTH=456
          Length = 456

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 2/140 (1%)

Query: 2   LSAQLNKPDLWDDPVHAGKISREHGSLLGKMKEVNALERELLEHIEMIKLAR--DENDXX 59
           L ++      WDD   A +       L  +M+ ++  +  + +   ++KL    D  D  
Sbjct: 114 LESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVS 173

Query: 60  XXXXXXXXXXDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWAAMVMQMYKS 119
                     ++ ++           G +D     + +  GAGGT++ DWA M+++MY  
Sbjct: 174 LLEEAMGIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMR 233

Query: 120 WAQRRGYKVTVVDEMPGEIA 139
           W +++ YK  VV+   GE A
Sbjct: 234 WGEKQRYKTKVVEMSNGEEA 253


>AT5G36170.2 | Symbols: HCF109, ATPRFB | high chlorophyll
           fluorescent 109 | chr5:14236083-14237974 REVERSE
           LENGTH=455
          Length = 455

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 2/140 (1%)

Query: 2   LSAQLNKPDLWDDPVHAGKISREHGSLLGKMKEVNALERELLEHIEMIKLAR--DENDXX 59
           L ++      WDD   A +       L  +M+ ++  +  + +   ++KL    D  D  
Sbjct: 113 LESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVS 172

Query: 60  XXXXXXXXXXDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWAAMVMQMYKS 119
                     ++ ++           G +D     + +  GAGGT++ DWA M+++MY  
Sbjct: 173 LLEEAMGIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMR 232

Query: 120 WAQRRGYKVTVVDEMPGEIA 139
           W +++ YK  VV+   GE A
Sbjct: 233 WGEKQRYKTKVVEMSNGEEA 252


>AT5G36170.3 | Symbols: HCF109, ATPRFB | high chlorophyll
           fluorescent 109 | chr5:14236297-14237974 REVERSE
           LENGTH=391
          Length = 391

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 2/140 (1%)

Query: 2   LSAQLNKPDLWDDPVHAGKISREHGSLLGKMKEVNALERELLEHIEMIKLAR--DENDXX 59
           L ++      WDD   A +       L  +M+ ++  +  + +   ++KL    D  D  
Sbjct: 114 LESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVS 173

Query: 60  XXXXXXXXXXDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWAAMVMQMYKS 119
                     ++ ++           G +D     + +  GAGGT++ DWA M+++MY  
Sbjct: 174 LLEEAMGIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMR 233

Query: 120 WAQRRGYKVTVVDEMPGEIA 139
           W +++ YK  VV+   GE A
Sbjct: 234 WGEKQRYKTKVVEMSNGEEA 253