Miyakogusa Predicted Gene

Lj0g3v0194299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0194299.1 Non Chatacterized Hit- tr|I1MZ82|I1MZ82_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,56.9,1e-18,seg,NULL,CUFF.12282.1
         (143 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39855.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    47   5e-06

>AT2G39855.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT3G55646.1); Has 35333 Blast hits to
           34131 proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr2:16637845-16638546 FORWARD LENGTH=151
          Length = 151

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 14/135 (10%)

Query: 1   MDTKKKQAGDSSSSTMNFDHLFGPKDXXXXXXXXXXXXXXXXXPPPPVGRRESRTQVVGS 60
           MD KK  +G SSSS+ + DH+FGP+                  PP  V +       + S
Sbjct: 1   MDKKKSVSGSSSSSSSSLDHIFGPRVSHSYSSSTTGLFKSIFPPPSAVTQGN-----LTS 55

Query: 61  RNFSA---PGTHSSNTNKGESNSRIICKNYQNEMVEAQPSYFSSSIYYGGQENYSPRTTQ 117
           RN +A   P    +   +GE +     K+YQ+E  +  P   SSSIYYGGQ+NYS  TT 
Sbjct: 56  RNGAAKYQPTNFETPNERGERSKNKERKSYQSEETQP-PCNLSSSIYYGGQDNYSSSTTN 114

Query: 118 PHQHVVSAINPHPFL 132
           P      A++P+ F+
Sbjct: 115 P-----DAVSPYIFV 124