Miyakogusa Predicted Gene

Lj0g3v0194129.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0194129.1 tr|B9NC71|B9NC71_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_679475 PE=4
SV=1,72.88,0.000000000000002,seg,NULL,CUFF.12273.1
         (450 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03070.1 | Symbols: MED8 | mediator subunit 8 | chr2:905978-9...   339   2e-93

>AT2G03070.1 | Symbols: MED8 | mediator subunit 8 |
           chr2:905978-908792 FORWARD LENGTH=524
          Length = 524

 Score =  339 bits (870), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 179/284 (63%), Positives = 214/284 (75%), Gaps = 26/284 (9%)

Query: 31  KTRAIGLFKAISRILEDFDAYARTNTTPKWQDILGQYSMLNLELFNIVDEIKKVSKAFLV 90
           KTRA+ L KAI+RILEDFDAY RTNTTPKWQDILGQYSM+NLELFNIV+E+K+VS AF+V
Sbjct: 31  KTRAVSLAKAIARILEDFDAYGRTNTTPKWQDILGQYSMVNLELFNIVEEVKRVSNAFVV 90

Query: 91  YPKNVNAQNATILPVMLSSKLLPEIEIDDASKRDQLLHSMQNLPIPTQIDKLKARIDMIA 150
            PKNVNA NA ILPVMLSSKLLPE+E DD +KR+QLL  +Q+LPIP QI++LKAR+DMIA
Sbjct: 91  LPKNVNAMNAAILPVMLSSKLLPEMETDDNAKREQLLQGVQSLPIPMQIERLKARMDMIA 150

Query: 151 AACEGAEKVLADTRKAYCFGTRQGPSSIAPTTLDKGQAAKIQEKENLLRSAVNVGEGLRI 210
           AACE AE+VLADTRKAY FGTRQGPS +   T+DKGQAAKIQE+E +LR AVN G+G ++
Sbjct: 151 AACENAERVLADTRKAYGFGTRQGPSMLP--TMDKGQAAKIQEQEKMLRDAVNDGKGTQL 208

Query: 211 PGDQRQITPALPMHLADALTVNES---SFPDGSTNSVYIKNTPLPSNTMXXXXXXXXXXX 267
           P DQRQIT ALP HLAD L +N++   + P G +N++  +     S T            
Sbjct: 209 PPDQRQITTALPPHLADVLIINDAGKIALP-GQSNNINNQGMMQVSGT------------ 255

Query: 268 XXXXXRSAASPSAAMNTTSFDNNATASPLPYANSPRSSTNMMNT 311
                RSAASPS      +FDN  T SPLPY+NSPR +T M+N 
Sbjct: 256 -QFVGRSAASPSGP----NFDN--TTSPLPYSNSPR-ATGMVNV 291



 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 46/60 (76%), Gaps = 4/60 (6%)

Query: 392 ASGHVQHGIGQSQLNQGNQMTR-LNQFSGPANSALFSAAQTTPNTQMIPNMSATIPSQSL 450
           + GH+QH + Q QLN    M R LNQFSG ANSALF++AQ +P++QMIPNMS ++ SQ+L
Sbjct: 385 SGGHIQHSMSQGQLNPA--MNRHLNQFSGGANSALFTSAQGSPSSQMIPNMS-SMQSQTL 441