Miyakogusa Predicted Gene

Lj0g3v0193039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0193039.1 tr|Q2QPA8|Q2QPA8_ORYSJ HAT family dimerisation
domain containing protein OS=Oryza sativa subsp.
japo,56.63,2e-19,Ribonuclease H-like,Ribonuclease H-like domain;
Dimer_Tnp_hAT,HAT dimerisation; HAT DIMERISATION DOM,CUFF.12214.1
         (151 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G33406.1 | Symbols:  | hAT dimerisation domain-containing pro...   173   4e-44
AT1G79740.1 | Symbols:  | hAT transposon superfamily | chr1:3000...    93   7e-20
AT4G15020.2 | Symbols:  | hAT transposon superfamily | chr4:8575...    85   2e-17
AT4G15020.1 | Symbols:  | hAT transposon superfamily | chr4:8575...    85   2e-17
AT3G22220.2 | Symbols:  | hAT transposon superfamily | chr3:7839...    78   2e-15
AT3G22220.1 | Symbols:  | hAT transposon superfamily | chr3:7839...    78   2e-15
AT3G17450.1 | Symbols:  | hAT dimerisation domain-containing pro...    74   5e-14
AT5G31412.1 | Symbols:  | hAT transposon superfamily protein | c...    51   3e-07

>AT5G33406.1 | Symbols:  | hAT dimerisation domain-containing
           protein / transposase-related | chr5:12676126-12678403
           REVERSE LENGTH=509
          Length = 509

 Score =  173 bits (439), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 103/149 (69%), Gaps = 1/149 (0%)

Query: 1   MFGTRFAIEQRGAIAPAQWWRMYGKSTPNLQRLAIKILSLAYSVSGCEHNWSVLEQIHTK 60
           +FG   AI  R  ++PA+WW  YG STPNLQ  AIK+LSL  S +GCE NW V + +HTK
Sbjct: 199 LFGIPMAIRLRTKMSPAEWWSAYGSSTPNLQNFAIKVLSLTCSATGCERNWGVFQLLHTK 258

Query: 61  KRNKLEHKRLEDLVFVKYNQALVRRYNIRDELDPISLDDIDKSNEWLVGTMDEDGNDAEN 120
           +RN+L   RL D++FVKYN+AL RRY   D  DPI L++ID+ NEWL G M+E+ +D EN
Sbjct: 259 RRNRLTQCRLNDMIFVKYNRALQRRYKRNDTFDPILLNEIDQCNEWLTGRMEENSSDTEN 318

Query: 121 -DRVFPNDDLTWDVVYQASGIGEPTINTR 148
            D VF NDDLTW  V +A+G  +P   TR
Sbjct: 319 DDLVFENDDLTWAEVGEAAGANDPYYATR 347


>AT1G79740.1 | Symbols:  | hAT transposon superfamily |
           chr1:30004367-30006715 REVERSE LENGTH=651
          Length = 651

 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 2/107 (1%)

Query: 1   MFGTRFAIEQRGAIAPAQWWRMYGKSTPNLQRLAIKILSLAYSVSGCEHNWSVLEQIHTK 60
           MFG   A+E R +++P  WW  +G S P LQR+AI+ILS   S    E  WS  +Q+H +
Sbjct: 503 MFGCNLAMEARDSVSPGLWWEQFGDSAPVLQRVAIRILSQVCSGYNLERQWSTFQQMHWE 562

Query: 61  KRNKLEHKRLEDLVFVKYNQALVRRYNIRDELDPISLDDIDKSNEWL 107
           +RNK++ + L  L +V  N  L R   +  E DPI+L+DID  +EW+
Sbjct: 563 RRNKIDREILNKLAYVNQNLKLGRMITL--ETDPIALEDIDMMSEWV 607


>AT4G15020.2 | Symbols:  | hAT transposon superfamily |
           chr4:8575806-8578372 FORWARD LENGTH=768
          Length = 768

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 64/112 (57%), Gaps = 4/112 (3%)

Query: 1   MFGTRFAIEQRGAIAPAQWWRMYGKSTPNLQRLAIKILSLAYSVS-GCEHNWSVLEQIHT 59
           +FG   AI  R  + PA+WW  YG+S  NL R AI+ILS   S S  C  N   +E I+ 
Sbjct: 593 VFGRNLAIRARDTMLPAEWWSTYGESCLNLSRFAIRILSQTCSSSVSCRRNQIPVEHIYQ 652

Query: 60  KKRNKLEHKRLEDLVFVKYNQAL--VRRYNIRDELDPISLDDIDKSNEWLVG 109
            K N +E KRL DLVFV+YN  L  +   +  D LDP+S + ID   EW+ G
Sbjct: 653 SK-NSIEQKRLSDLVFVQYNMRLRQLGPGSGDDTLDPLSHNRIDVLKEWVSG 703


>AT4G15020.1 | Symbols:  | hAT transposon superfamily |
           chr4:8575806-8578372 FORWARD LENGTH=768
          Length = 768

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 64/112 (57%), Gaps = 4/112 (3%)

Query: 1   MFGTRFAIEQRGAIAPAQWWRMYGKSTPNLQRLAIKILSLAYSVS-GCEHNWSVLEQIHT 59
           +FG   AI  R  + PA+WW  YG+S  NL R AI+ILS   S S  C  N   +E I+ 
Sbjct: 593 VFGRNLAIRARDTMLPAEWWSTYGESCLNLSRFAIRILSQTCSSSVSCRRNQIPVEHIYQ 652

Query: 60  KKRNKLEHKRLEDLVFVKYNQAL--VRRYNIRDELDPISLDDIDKSNEWLVG 109
            K N +E KRL DLVFV+YN  L  +   +  D LDP+S + ID   EW+ G
Sbjct: 653 SK-NSIEQKRLSDLVFVQYNMRLRQLGPGSGDDTLDPLSHNRIDVLKEWVSG 703


>AT3G22220.2 | Symbols:  | hAT transposon superfamily |
           chr3:7839808-7842358 REVERSE LENGTH=761
          Length = 761

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 5/111 (4%)

Query: 1   MFGTRFAIEQRGAIAPAQWWRMYGKSTPNLQRLAIKILSLAYSVS-GCEHNWSVLEQIHT 59
           +FG   AI  R  + PA+WW  YG+S  NL R AI+ILS   S S G   N + + QI+ 
Sbjct: 587 IFGRNLAIRARDTMLPAEWWSTYGESCLNLSRFAIRILSQTCSSSIGSVRNLTSISQIYE 646

Query: 60  KKRNKLEHKRLEDLVFVKYNQALVR---RYNIRDELDPISLDDIDKSNEWL 107
            K N +E +RL DLVFV+YN  L R     +  D +DP+S  +++   +W+
Sbjct: 647 SK-NSIERQRLNDLVFVQYNMRLRRIGSESSGDDTVDPLSHSNMEVLEDWV 696


>AT3G22220.1 | Symbols:  | hAT transposon superfamily |
           chr3:7839808-7842358 REVERSE LENGTH=761
          Length = 761

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 5/111 (4%)

Query: 1   MFGTRFAIEQRGAIAPAQWWRMYGKSTPNLQRLAIKILSLAYSVS-GCEHNWSVLEQIHT 59
           +FG   AI  R  + PA+WW  YG+S  NL R AI+ILS   S S G   N + + QI+ 
Sbjct: 587 IFGRNLAIRARDTMLPAEWWSTYGESCLNLSRFAIRILSQTCSSSIGSVRNLTSISQIYE 646

Query: 60  KKRNKLEHKRLEDLVFVKYNQALVR---RYNIRDELDPISLDDIDKSNEWL 107
            K N +E +RL DLVFV+YN  L R     +  D +DP+S  +++   +W+
Sbjct: 647 SK-NSIERQRLNDLVFVQYNMRLRRIGSESSGDDTVDPLSHSNMEVLEDWV 696


>AT3G17450.1 | Symbols:  | hAT dimerisation domain-containing
           protein | chr3:5972793-5975684 REVERSE LENGTH=877
          Length = 877

 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 2   FGTRFAIEQRGAIAPAQWWRMYGKSTPNLQRLAIKILSLAYSVSGCEHNWSVLEQIHTKK 61
           FGT  AI  R  + P+ WW+ +G S   LQR+A++ILS   S  GCE  WSV +Q++++ 
Sbjct: 707 FGTDIAIGTRTELDPSAWWQQHGISCLELQRVAVRILSHTCSSVGCEPKWSVYDQVNSQC 766

Query: 62  RNKLEHKRLEDLVFVKYN-----QALVRRYNIRDELDP 94
           +++   K  +DL +V YN     + L +R +  DE  P
Sbjct: 767 QSQFGKKSTKDLTYVHYNLRLREKQLKQRLHYEDEPPP 804


>AT5G31412.1 | Symbols:  | hAT transposon superfamily protein |
           chr5:11541463-11543768 REVERSE LENGTH=433
          Length = 433

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 28/47 (59%)

Query: 9   EQRGAIAPAQWWRMYGKSTPNLQRLAIKILSLAYSVSGCEHNWSVLE 55
           + +G +    WW +YG   P LQRLAIKILSL  S S  E NWS  E
Sbjct: 329 KMKGRLDSWNWWSLYGCHVPTLQRLAIKILSLTPSSSSFERNWSAFE 375