Miyakogusa Predicted Gene

Lj0g3v0192379.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0192379.1 tr|Q9LUN3|Q9LUN3_ARATH Leucine-rich repeat
disease resistance protein-like OS=Arabidopsis thaliana
G,53.49,9e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.12170.1
         (85 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17640.1 | Symbols:  | Leucine-rich repeat (LRR) family prote...    98   1e-21
AT1G03440.1 | Symbols:  | Leucine-rich repeat (LRR) family prote...    77   2e-15
AT4G03010.1 | Symbols:  | RNI-like superfamily protein | chr4:13...    76   6e-15

>AT3G17640.1 | Symbols:  | Leucine-rich repeat (LRR) family protein
           | chr3:6032393-6033583 FORWARD LENGTH=396
          Length = 396

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 57/86 (66%), Gaps = 2/86 (2%)

Query: 2   GSVPEEYVKSVCRGSTRTLYLQHNFFTGIPLEAGTVLPDTASLCLSYNCMELPPAV--MT 59
           G +PEEYVKS+  G+T+ L+LQHN+FT  P  +G  LPD+ SLCLSYNCME  P V   T
Sbjct: 311 GDIPEEYVKSLINGTTKQLFLQHNYFTRFPWNSGLQLPDSVSLCLSYNCMETDPVVGLST 370

Query: 60  CPASSGEEMSRPTTQCSVFQKGSNGG 85
           CP      +SRP +QCS F   S+ G
Sbjct: 371 CPIEVAPLLSRPASQCSRFYNHSSTG 396


>AT1G03440.1 | Symbols:  | Leucine-rich repeat (LRR) family protein
           | chr1:852681-853874 FORWARD LENGTH=397
          Length = 397

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 2   GSVPEEYVKSVCRGSTRTLYLQHNFFTGIPLEAGTVLPDTASLCLSYNCMELPPAVMTCP 61
           G VP  +V+ +   + +TLYLQHNF TGI +     +P ++SLCL YNCM +PP    CP
Sbjct: 320 GEVPASFVERLLSANIQTLYLQHNFLTGIQISPAAEIPVSSSLCLQYNCM-VPPLQTPCP 378

Query: 62  ASSGEEMSRPTTQCSVFQ 79
             +G + +RPTTQC+ ++
Sbjct: 379 LKAGPQKTRPTTQCTEWR 396


>AT4G03010.1 | Symbols:  | RNI-like superfamily protein |
           chr4:1329952-1331139 FORWARD LENGTH=395
          Length = 395

 Score = 75.9 bits (185), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 2   GSVPEEYVKSVCRGSTRTLYLQHNFFTGIPLEAGTVLPDTASLCLSYNCMELPPAVMTCP 61
           G VP  +V  +   + +TLYLQHNF TGI +     +P ++SLCL YNCM L P    CP
Sbjct: 318 GQVPVSFVDRLLASNIQTLYLQHNFLTGIQISPAADIPVSSSLCLQYNCMVL-PVQTPCP 376

Query: 62  ASSGEEMSRPTTQCS 76
             +G + +RPTTQCS
Sbjct: 377 VKAGLQKTRPTTQCS 391