Miyakogusa Predicted Gene

Lj0g3v0191739.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0191739.1 tr|G7L906|G7L906_MEDTR Peptidyl-tRNA hydrolase
OS=Medicago truncatula GN=MTR_8g103890 PE=3
SV=1,78.82,0,Pept_tRNA_hydro_bact,Peptidyl-tRNA hydrolase; seg,NULL;
Pept_tRNA_hydro,Peptidyl-tRNA hydrolase;
SUB,NODE_4872_length_1362_cov_54.908222.path1.1
         (255 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18440.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein...   324   3e-89
AT5G19830.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein...   242   2e-64
AT5G16140.2 | Symbols:  | Peptidyl-tRNA hydrolase family protein...   228   2e-60
AT5G16140.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein...   228   2e-60
AT5G38290.2 | Symbols:  | Peptidyl-tRNA hydrolase family protein...   225   2e-59
AT5G38290.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein...   225   3e-59

>AT1G18440.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein |
           chr1:6345994-6347686 FORWARD LENGTH=288
          Length = 288

 Score =  324 bits (831), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 151/199 (75%), Positives = 177/199 (88%)

Query: 56  PKKKEPWLIVGLGNPGKKYASTRHNVGFEMVDTIAEAEGISINSVSFKALFGKGVIGDVP 115
           P  + PWLIVGLGNPGKKY  TRHNVGFEMVD +A+AEGIS+N+V+FKALFGKGVIG++P
Sbjct: 89  PPLQLPWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIP 148

Query: 116 VILAKPQTYMNLSGESVGAIVSYYKIPVKQVLVIFDDMDLPFAKLRLLPKGGHGGHNGMK 175
           ++LAKPQT+MNLSGESVG IVS+YKIP+KQVLV++DD+DLPF KLRLLPKGGHGGHNGM+
Sbjct: 149 IMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMR 208

Query: 176 SVINHFKGNLGFPRLRIGIGRPPGKMDPVAFVLRSFTKQEREELDFTLQHGLEAVRILLL 235
           S+I+  KG+  FPRLRIGIGRPPGKMD   FVLR F +QE+EELD T Q GLEA+RILLL
Sbjct: 209 SIIDRLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLL 268

Query: 236 EGFDKSATFVNSSKKMEQI 254
           EGF+KSATFVN+ K MEQ+
Sbjct: 269 EGFNKSATFVNTRKSMEQL 287


>AT5G19830.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein |
           chr5:6703383-6705125 FORWARD LENGTH=219
          Length = 219

 Score =  242 bits (618), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 146/195 (74%)

Query: 60  EPWLIVGLGNPGKKYASTRHNVGFEMVDTIAEAEGISINSVSFKALFGKGVIGDVPVILA 119
            PWL +GLGNPG KY  TRHN+GFEM+D  AE+ GI +N V+FKA+ G+G + D+PVILA
Sbjct: 17  RPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILA 76

Query: 120 KPQTYMNLSGESVGAIVSYYKIPVKQVLVIFDDMDLPFAKLRLLPKGGHGGHNGMKSVIN 179
           KPQTYMNLSGES G + +YYK+P+ +VLV+ DDM LP   LRL  KGGHG HNG+KSV+N
Sbjct: 77  KPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMN 136

Query: 180 HFKGNLGFPRLRIGIGRPPGKMDPVAFVLRSFTKQEREELDFTLQHGLEAVRILLLEGFD 239
           HF+GN  F RLRIGIG+PPG+MDP AF+L+ F+   RE +D  L  G++A++++L + F 
Sbjct: 137 HFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDFG 196

Query: 240 KSATFVNSSKKMEQI 254
           +S    N  +K + +
Sbjct: 197 ESWRLFNVEQKYKHL 211


>AT5G16140.2 | Symbols:  | Peptidyl-tRNA hydrolase family protein |
           chr5:5270308-5271517 REVERSE LENGTH=240
          Length = 240

 Score =  228 bits (582), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 142/190 (74%)

Query: 61  PWLIVGLGNPGKKYASTRHNVGFEMVDTIAEAEGISINSVSFKALFGKGVIGDVPVILAK 120
           PWLIVGLGNPG KY  TRHNVGFEM+D +A  EG+ +N++  KAL G G I DVP++LAK
Sbjct: 45  PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104

Query: 121 PQTYMNLSGESVGAIVSYYKIPVKQVLVIFDDMDLPFAKLRLLPKGGHGGHNGMKSVINH 180
           PQTYMN SGESVG++ S+Y++P++ +L+I+D+M LP   LRL PKGG G HNG+KSV+ H
Sbjct: 105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGH 164

Query: 181 FKGNLGFPRLRIGIGRPPGKMDPVAFVLRSFTKQEREELDFTLQHGLEAVRILLLEGFDK 240
             G   FPRL IGIG+PPG MD  AF+L+ F+  E+++++  L+ G EAV+ L+L GF++
Sbjct: 165 LDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQ 224

Query: 241 SATFVNSSKK 250
             +  N  +K
Sbjct: 225 GISRFNLVQK 234


>AT5G16140.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein |
           chr5:5270308-5271517 REVERSE LENGTH=240
          Length = 240

 Score =  228 bits (582), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 142/190 (74%)

Query: 61  PWLIVGLGNPGKKYASTRHNVGFEMVDTIAEAEGISINSVSFKALFGKGVIGDVPVILAK 120
           PWLIVGLGNPG KY  TRHNVGFEM+D +A  EG+ +N++  KAL G G I DVP++LAK
Sbjct: 45  PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104

Query: 121 PQTYMNLSGESVGAIVSYYKIPVKQVLVIFDDMDLPFAKLRLLPKGGHGGHNGMKSVINH 180
           PQTYMN SGESVG++ S+Y++P++ +L+I+D+M LP   LRL PKGG G HNG+KSV+ H
Sbjct: 105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGH 164

Query: 181 FKGNLGFPRLRIGIGRPPGKMDPVAFVLRSFTKQEREELDFTLQHGLEAVRILLLEGFDK 240
             G   FPRL IGIG+PPG MD  AF+L+ F+  E+++++  L+ G EAV+ L+L GF++
Sbjct: 165 LDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQ 224

Query: 241 SATFVNSSKK 250
             +  N  +K
Sbjct: 225 GISRFNLVQK 234


>AT5G38290.2 | Symbols:  | Peptidyl-tRNA hydrolase family protein |
           chr5:15303491-15305381 FORWARD LENGTH=250
          Length = 250

 Score =  225 bits (574), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 137/190 (72%)

Query: 61  PWLIVGLGNPGKKYASTRHNVGFEMVDTIAEAEGISINSVSFKALFGKGVIGDVPVILAK 120
           PWLIVGLGNPG KY  TRHN+GFEM+D IA A  IS+N++  KAL G G +G+VP++L K
Sbjct: 55  PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVK 114

Query: 121 PQTYMNLSGESVGAIVSYYKIPVKQVLVIFDDMDLPFAKLRLLPKGGHGGHNGMKSVINH 180
           PQ YMN SGESVG + +YY+IP++ +L+I+DDM L    LRL PKGGH  HNG+K+V  H
Sbjct: 115 PQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEH 174

Query: 181 FKGNLGFPRLRIGIGRPPGKMDPVAFVLRSFTKQEREELDFTLQHGLEAVRILLLEGFDK 240
             G  G+PRL IGIG PPG MD  AF+L+ F+  ER+++D  L+ G+E V+ L+ EGF  
Sbjct: 175 LNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSD 234

Query: 241 SATFVNSSKK 250
           S +  N  +K
Sbjct: 235 SISRFNLGQK 244


>AT5G38290.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein |
           chr5:15303603-15305381 FORWARD LENGTH=246
          Length = 246

 Score =  225 bits (573), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 137/190 (72%)

Query: 61  PWLIVGLGNPGKKYASTRHNVGFEMVDTIAEAEGISINSVSFKALFGKGVIGDVPVILAK 120
           PWLIVGLGNPG KY  TRHN+GFEM+D IA A  IS+N++  KAL G G +G+VP++L K
Sbjct: 51  PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVK 110

Query: 121 PQTYMNLSGESVGAIVSYYKIPVKQVLVIFDDMDLPFAKLRLLPKGGHGGHNGMKSVINH 180
           PQ YMN SGESVG + +YY+IP++ +L+I+DDM L    LRL PKGGH  HNG+K+V  H
Sbjct: 111 PQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEH 170

Query: 181 FKGNLGFPRLRIGIGRPPGKMDPVAFVLRSFTKQEREELDFTLQHGLEAVRILLLEGFDK 240
             G  G+PRL IGIG PPG MD  AF+L+ F+  ER+++D  L+ G+E V+ L+ EGF  
Sbjct: 171 LNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSD 230

Query: 241 SATFVNSSKK 250
           S +  N  +K
Sbjct: 231 SISRFNLGQK 240