Miyakogusa Predicted Gene

Lj0g3v0191689.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0191689.1 tr|B9HUR3|B9HUR3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_884079 PE=4
SV=1,61.96,7e-19,Chlorophyllase,Chlorophyllase; no description,NULL;
alpha/beta-Hydrolases,NULL,CUFF.12137.1
         (110 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43860.1 | Symbols: ATCLH2, CLH2 | chlorophyllase 2 | chr5:17...    87   2e-18
AT1G19670.1 | Symbols: ATCLH1, CORI1, ATHCOR1, CLH1 | chlorophyl...    65   1e-11

>AT5G43860.1 | Symbols: ATCLH2, CLH2 | chlorophyllase 2 |
           chr5:17630492-17632184 FORWARD LENGTH=318
          Length = 318

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 5/90 (5%)

Query: 19  ASTALTNVFDSGKYTTKFQRIESNS--CNGTHPDPPPP---KSLLIATPLEGGEFPVLLF 73
           +S++  N F+ GKY +    ++S+S  C  T      P   K LL+ATP+E G++PV++ 
Sbjct: 2   SSSSSRNAFEDGKYKSNLLTLDSSSRCCKITPSSRASPSPPKQLLVATPVEEGDYPVVML 61

Query: 74  LHGYLLYNSFYSQLIQHIASHGFIVIAPQV 103
           LHGYLLYNSFYSQL+ H++SHGFI+IAPQ+
Sbjct: 62  LHGYLLYNSFYSQLMLHVSSHGFILIAPQL 91


>AT1G19670.1 | Symbols: ATCLH1, CORI1, ATHCOR1, CLH1 |
           chlorophyllase 1 | chr1:6803796-6804923 REVERSE
           LENGTH=324
          Length = 324

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 37/51 (72%)

Query: 53  PPKSLLIATPLEGGEFPVLLFLHGYLLYNSFYSQLIQHIASHGFIVIAPQV 103
           PPK + I  P   G +PV+LF HG+ L N FYS ++ HIASHG+I++APQ+
Sbjct: 41  PPKPVRITCPTVAGTYPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQL 91