Miyakogusa Predicted Gene

Lj0g3v0191599.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0191599.1 Non Chatacterized Hit- tr|C5WVI2|C5WVI2_SORBI
Putative uncharacterized protein Sb01g031577
(Fragment,34.27,0.000000000000002,seg,NULL,CUFF.12124.1
         (366 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27461.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   244   1e-64

>AT1G27461.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr1:9537948-9539012 REVERSE LENGTH=354
          Length = 354

 Score =  244 bits (622), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 160/374 (42%), Positives = 203/374 (54%), Gaps = 51/374 (13%)

Query: 1   MIKTLSPYSNPA-----KTAEIMSRYRPIAPKPETXXXXXXXXXXXXXXXXXXXXXXXPY 55
           MIK L+P+S+ +     KTAEI+S+YRPIAPKP T                       PY
Sbjct: 1   MIKILNPHSHHSQTTTLKTAEILSKYRPIAPKPGTPRVNDDDPSSSMSHKISQS----PY 56

Query: 56  LRNLWPQLQARPTRTRKRGRAPIALPSSL--KRQKTTQILGFCPPC---HVTSPVKNLSF 110
           LRNLWPQLQARPTRTRKRGR  +  PSSL  KR K++             V  P+K LSF
Sbjct: 57  LRNLWPQLQARPTRTRKRGRGGMG-PSSLAMKRPKSSCGSSSTSTISTQRVLGPIKTLSF 115

Query: 111 QSFASPSQLPQLPLTNHGI--GV----LNCTLEKTNPGXXXXXXXXXXXXXXXKLELTNI 164
           Q+F    +LP LP   +G   GV    +   L + +P                + E+   
Sbjct: 116 QAFTH-HRLPNLPQVGYGFENGVSSTLVTLPLLQCSP----------PSSKCMEPEIKGK 164

Query: 165 EVIDLNTKAEIPQERDLLQQLQKP--------ASSVIAPHPIRPIGSFISVGCISKDSTT 216
            VIDLN  AE+ QERD L QLQ P         S VI+P PIRP+ S I+V  I  +  T
Sbjct: 165 GVIDLNKTAEVIQERDFLTQLQGPITTTTTATTSRVISPQPIRPVCSKINVAYI--NPLT 222

Query: 217 MSNVALAQNPKKXXXXXXXXXXXXXXXXISDSKNRVRVANSAYKEMVGQPECPWLESMVQ 276
             +     + K                 I+DS +RVR+ NSAYKEM+GQPEC WL+SMV 
Sbjct: 223 NPSPTSQTSKKSPREVEEDVESDDLPSVITDSNSRVRLVNSAYKEMMGQPECSWLDSMV- 281

Query: 277 CASSSCKSKRISGEVTLHLCDSSIPI--SSNGFSCWVRIEWQSEQRKSCVSAFCDVVKLC 334
                 + KRI GEV ++ C+S IP+   +NGFSCWVRI+W  + ++  + AFCDV KL 
Sbjct: 282 ------RGKRICGEVMINFCESKIPVMTENNGFSCWVRIDWGRDGKEEYMHAFCDVTKLA 335

Query: 335 CDSRDYLFTWRFHT 348
           CDS+DY+FTWRFHT
Sbjct: 336 CDSKDYVFTWRFHT 349