Miyakogusa Predicted Gene

Lj0g3v0191559.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0191559.1 tr|Q26C76|Q26C76_FLABB Ribosomal RNA large
subunit methyltransferase H OS=Flavobacteria bacterium
(s,42.71,1e-18,SPOUT_MTase,SPOUT methyltransferase, predicted; no
description,NULL; alpha/beta knot,NULL,CUFF.12125.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10620.1 | Symbols:  | methyltransferases | chr5:3355466-3356...   162   4e-41
AT5G10605.2 | Symbols:  | methyltransferases | chr5:3353189-3353...    57   2e-09
AT5G10605.1 | Symbols:  | methyltransferases | chr5:3353189-3353...    57   2e-09

>AT5G10620.1 | Symbols:  | methyltransferases | chr5:3355466-3356615
           REVERSE LENGTH=193
          Length = 193

 Score =  162 bits (410), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 73/96 (76%), Positives = 88/96 (91%)

Query: 1   MNIIRSDDWVVMLDERGQDIGSEQMAELVGGASNTGASRLSFCIGGPYGHGRKIRERANI 60
           M +I SDDWVV+LDERG+DI SEQMAEL+G A N+GASR+SFCIGG YGHG ++R+RAN+
Sbjct: 98  MKLIGSDDWVVVLDERGRDIDSEQMAELLGDAGNSGASRISFCIGGAYGHGTQVRKRANV 157

Query: 61  SIKLSSLVLNHQIALLVLMEQLYRSWTILRGQKYHH 96
           +I+LSS+VLNHQIAL+VLMEQLYRSWTIL+GQ YHH
Sbjct: 158 TIRLSSMVLNHQIALVVLMEQLYRSWTILKGQNYHH 193


>AT5G10605.2 | Symbols:  | methyltransferases |
          chr5:3353189-3353359 REVERSE LENGTH=56
          Length = 56

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 33/36 (91%)

Query: 45 GGPYGHGRKIRERANISIKLSSLVLNHQIALLVLME 80
          G  YGHGR++R+RAN++I+LSS+VLNH IAL+VLME
Sbjct: 21 GVAYGHGRQLRKRANVAIRLSSMVLNHHIALVVLME 56


>AT5G10605.1 | Symbols:  | methyltransferases |
          chr5:3353189-3353359 REVERSE LENGTH=56
          Length = 56

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 33/36 (91%)

Query: 45 GGPYGHGRKIRERANISIKLSSLVLNHQIALLVLME 80
          G  YGHGR++R+RAN++I+LSS+VLNH IAL+VLME
Sbjct: 21 GVAYGHGRQLRKRANVAIRLSSMVLNHHIALVVLME 56