Miyakogusa Predicted Gene

Lj0g3v0190999.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0190999.1 Non Chatacterized Hit- tr|A2YT86|A2YT86_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,41.51,3e-19,DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE
(RNA POLYMERASE III SUBUNIT 5),NULL; Sin_N,DNA-d,CUFF.12106.1
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49530.1 | Symbols:  | SIN-like family protein | chr5:2010093...   131   2e-31

>AT5G49530.1 | Symbols:  | SIN-like family protein |
           chr5:20100934-20104242 FORWARD LENGTH=689
          Length = 689

 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 80/103 (77%), Gaps = 2/103 (1%)

Query: 67  EDQIVREIDVFFTPSLDENTELYVLQYPLRPSWRPYEFEERCKEVRLKPISSRVEIDLSI 126
           +D +VREIDVFF PS+D NT+LYVLQYPLRPSWRPYE +ERC+EVR+ P +S+VEIDLS+
Sbjct: 115 DDVVVREIDVFFKPSIDANTQLYVLQYPLRPSWRPYEMDERCEEVRVNPSTSQVEIDLSM 174

Query: 127 DLDSQNIDRDFADKYSITKQTLHTPWEPATANGCVVGLLTGDK 169
           D+ S+N D +F    ++TKQTL T W+        VG+L+GDK
Sbjct: 175 DVHSKNYDSNFG--LNMTKQTLKTTWKQPPTLDYAVGVLSGDK 215