Miyakogusa Predicted Gene
- Lj0g3v0190909.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0190909.1 Non Chatacterized Hit- tr|B6U4G2|B6U4G2_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,46.32,0.00004,seg,NULL; TCP,Transcription factor TCP subgroup;
TCP,Transcription factor, TCP; FAMILY NOT NAMED,NUL,CUFF.12093.1
(329 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23280.1 | Symbols: | TCP family transcription factor | chr... 223 2e-58
AT5G08330.1 | Symbols: | TCP family transcription factor | chr... 181 5e-46
AT1G72010.1 | Symbols: | TCP family transcription factor | chr... 109 2e-24
AT1G58100.1 | Symbols: | TCP family transcription factor | chr... 107 9e-24
AT3G27010.1 | Symbols: AT-TCP20, PCF1, TCP20, ATTCP20 | TEOSINTE... 105 5e-23
AT3G47620.1 | Symbols: AtTCP14, TCP14 | TEOSINTE BRANCHED, cyclo... 104 7e-23
AT1G35560.1 | Symbols: | TCP family transcription factor | chr... 102 3e-22
AT1G69690.1 | Symbols: | TCP family transcription factor | chr... 101 8e-22
AT5G51910.2 | Symbols: | TCP family transcription factor | chr... 97 1e-20
AT5G51910.1 | Symbols: | TCP family transcription factor | chr... 97 1e-20
AT2G45680.1 | Symbols: | TCP family transcription factor | chr... 95 6e-20
AT5G41030.1 | Symbols: | TCP family transcription factor | chr... 92 6e-19
AT2G37000.1 | Symbols: | TCP family transcription factor | chr... 85 7e-17
AT1G58100.2 | Symbols: | TCP family transcription factor | chr... 69 5e-12
AT3G45150.1 | Symbols: TCP16 | TCP domain protein 16 | chr3:1653... 66 3e-11
AT3G18550.1 | Symbols: BRC1, TCP18, ATTCP18 | TCP family transcr... 48 9e-06
>AT5G23280.1 | Symbols: | TCP family transcription factor |
chr5:7843017-7843769 FORWARD LENGTH=250
Length = 250
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/256 (51%), Positives = 148/256 (57%), Gaps = 27/256 (10%)
Query: 76 TTNGSMIDPQRTNQQQQLSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKS 135
++NG++I+ QQ + VKKPP+KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKS
Sbjct: 20 SSNGALIE-----QQPSVVVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKS 74
Query: 136 DGQTIEWLLRQAEXXXXXXXXXXXXXXXFSSVSVSLRGAXXXXXXXXXXXDHKP--LLAP 193
DGQTIEWLLRQAE FS+ SVS+RGA DHKP LL
Sbjct: 75 DGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGA-----TNSTSLDHKPTSLLGG 129
Query: 194 TPTPFILGKRIRTXXXXXXXXXXXXVGHSLVGSAAPAGLWALPARPDFGQIWSFXXXXXX 253
T +PFILGKR+R VG + PAG WA+PARPDFGQ+WSF
Sbjct: 130 T-SPFILGKRVRADEDSNNSHNHSSVGKDETFTTTPAGFWAVPARPDFGQVWSFAGAPQ- 187
Query: 254 XPEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGEASAARVGNYLPGHLNLLAS 313
EM MGEASAARVGNYLPGHLNLLAS
Sbjct: 188 --EM-----------FLQQQHHHQQPLFVHQQQQQQAAMGEASAARVGNYLPGHLNLLAS 234
Query: 314 LSGGHGNSGRRDDDHR 329
LSGG S RR++D R
Sbjct: 235 LSGGSPGSDRREEDPR 250
>AT5G08330.1 | Symbols: | TCP family transcription factor |
chr5:2680828-2681547 FORWARD LENGTH=239
Length = 239
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 124/268 (46%), Positives = 140/268 (52%), Gaps = 39/268 (14%)
Query: 70 MSSSDGTTNGSMIDPQRTNQQQQLSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTR 129
M+ +DG + +I Q +N+ +VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTR
Sbjct: 1 MADNDGAVSNGIIVEQTSNKGPLNAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTR 60
Query: 130 ELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSSVSVSLRGAXXXXXXXXXXXDHKP 189
ELGHKSDGQTIEWLLRQAE FS+ S+S
Sbjct: 61 ELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASLS------------------- 101
Query: 190 LLAPTPTPFILGKRI---RTXXXXXXXXXXXXVGHS----LVGSAAPAGLWALPARPDFG 242
T +PF LGKR+ VGH+ L+G G WA+PARPDFG
Sbjct: 102 ----TSSPFTLGKRVVRAEEGESGGGGGGGLTVGHTMGTSLMGGGGSGGFWAVPARPDFG 157
Query: 243 QIWSFXXXXXXXPEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGEASAARVGN 302
Q+WSF PEM EASAARVGN
Sbjct: 158 QVWSF--ATGAPPEMVFAQQQQPATLFVRHQQQQQASAAAAAAMG------EASAARVGN 209
Query: 303 YLPG-HLNLLASLSGGHGNSGRRDDDHR 329
YLPG HLNLLASLSGG SGRR+DDH
Sbjct: 210 YLPGHHLNLLASLSGGANGSGRREDDHE 237
>AT1G72010.1 | Symbols: | TCP family transcription factor |
chr1:27107844-27108971 FORWARD LENGTH=375
Length = 375
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 59/79 (74%)
Query: 94 SVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXX 153
S K P+KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE
Sbjct: 57 SAVKKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIA 116
Query: 154 XXXXXXXXXXFSSVSVSLR 172
FS+++ SLR
Sbjct: 117 STGTGTIPANFSTLNASLR 135
>AT1G58100.1 | Symbols: | TCP family transcription factor |
chr1:21512680-21513885 REVERSE LENGTH=401
Length = 401
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 58/76 (76%)
Query: 97 KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXX 156
K +KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE
Sbjct: 57 KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATG 116
Query: 157 XXXXXXXFSSVSVSLR 172
FS++SVSLR
Sbjct: 117 TGTIPANFSTLSVSLR 132
>AT3G27010.1 | Symbols: AT-TCP20, PCF1, TCP20, ATTCP20 | TEOSINTE
BRANCHED 1, cycloidea, PCF (TCP)-domain family protein
20 | chr3:9957810-9958754 REVERSE LENGTH=314
Length = 314
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 66/91 (72%), Gaps = 6/91 (6%)
Query: 58 KPYSHFSLHLLTMSSSDGTTNGSMIDPQRTNQQQQLSVKKPPSKDRHSKVDGRGRRIRMP 117
KP + + +S+SD N +++ Q QL K+ +KDRH+KV+GRGRRIRMP
Sbjct: 42 KPTTEIKDFQIVVSASDKEPN------KKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMP 95
Query: 118 IICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
+CAAR+FQLTRELGHKSDG+TI+WLL+QAE
Sbjct: 96 ALCAARIFQLTRELGHKSDGETIQWLLQQAE 126
>AT3G47620.1 | Symbols: AtTCP14, TCP14 | TEOSINTE BRANCHED,
cycloidea and PCF (TCP) 14 | chr3:17559004-17560473
FORWARD LENGTH=489
Length = 489
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 62/90 (68%), Gaps = 5/90 (5%)
Query: 85 QRTNQQQQLSVKKPP-----SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQT 139
Q + ++ KKPP +KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+T
Sbjct: 97 QTQEESAVVAAKKPPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGET 156
Query: 140 IEWLLRQAEXXXXXXXXXXXXXXXFSSVSV 169
IEWLL+QAE F+S+++
Sbjct: 157 IEWLLQQAEPSVIAATGTGTIPANFTSLNI 186
>AT1G35560.1 | Symbols: | TCP family transcription factor |
chr1:13116099-13117124 REVERSE LENGTH=341
Length = 341
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 56/76 (73%)
Query: 97 KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXX 156
K PSKDRH KVDGRGRRIRMP ICAARVFQLTREL HKSDG+TIEWLL+QAE
Sbjct: 52 KRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATG 111
Query: 157 XXXXXXXFSSVSVSLR 172
S++++SLR
Sbjct: 112 TGTIPANISTLNISLR 127
>AT1G69690.1 | Symbols: | TCP family transcription factor |
chr1:26216449-26217426 FORWARD LENGTH=325
Length = 325
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 58/79 (73%), Gaps = 5/79 (6%)
Query: 96 KKPP-----SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXX 150
KKPP +KDRH+KV+GRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE
Sbjct: 43 KKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPA 102
Query: 151 XXXXXXXXXXXXXFSSVSV 169
F+S+++
Sbjct: 103 VIAATGTGTIPANFTSLNI 121
>AT5G51910.2 | Symbols: | TCP family transcription factor |
chr5:21094704-21095585 REVERSE LENGTH=293
Length = 293
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 65/100 (65%), Gaps = 9/100 (9%)
Query: 49 QIPRNSHCNKPYSHFSLHLLTMSSSDGTTNGSMIDPQRTNQQQQLSVKKPPSKDRHSKVD 108
Q+ +H + P ++ M DG + P +T + + K+P SKDRH+KV+
Sbjct: 15 QVTTMTHLSDPNPKTKPGMMLMKQEDG-----YLQPVKT----KPAPKRPTSKDRHTKVE 65
Query: 109 GRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
GRGRRIRMP CAARVFQLTRELGHKSDG+TI WLL +AE
Sbjct: 66 GRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAE 105
>AT5G51910.1 | Symbols: | TCP family transcription factor |
chr5:21094704-21095585 REVERSE LENGTH=293
Length = 293
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 65/100 (65%), Gaps = 9/100 (9%)
Query: 49 QIPRNSHCNKPYSHFSLHLLTMSSSDGTTNGSMIDPQRTNQQQQLSVKKPPSKDRHSKVD 108
Q+ +H + P ++ M DG + P +T + + K+P SKDRH+KV+
Sbjct: 15 QVTTMTHLSDPNPKTKPGMMLMKQEDG-----YLQPVKT----KPAPKRPTSKDRHTKVE 65
Query: 109 GRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
GRGRRIRMP CAARVFQLTRELGHKSDG+TI WLL +AE
Sbjct: 66 GRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAE 105
>AT2G45680.1 | Symbols: | TCP family transcription factor |
chr2:18820717-18821787 REVERSE LENGTH=356
Length = 356
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 47/54 (87%)
Query: 95 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
+K+ +KDRH+KV+GRGRRIRMP CAAR+FQLTRELGHKSDG+TI WLL AE
Sbjct: 70 LKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAE 123
>AT5G41030.1 | Symbols: | TCP family transcription factor |
chr5:16428706-16429437 FORWARD LENGTH=243
Length = 243
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 49/53 (92%)
Query: 96 KKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
KK P+KDRH KV+GRGRR+R+P +CAAR++QLT+ELGHKSDG+T+EWLL+ AE
Sbjct: 64 KKKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAE 116
>AT2G37000.1 | Symbols: | TCP family transcription factor |
chr2:15540390-15540956 FORWARD LENGTH=188
Length = 188
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 44/49 (89%)
Query: 100 SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
+KDRH+KV+GR RR+ MP + AAR+FQLTRELGHK++G+TIEWLL QAE
Sbjct: 43 TKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAE 91
>AT1G58100.2 | Symbols: | TCP family transcription factor |
chr1:21512680-21513885 REVERSE LENGTH=377
Length = 377
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/36 (83%), Positives = 33/36 (91%)
Query: 97 KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELG 132
K +KDRH+KVDGRGRRIRMP +CAARVFQLTRELG
Sbjct: 57 KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELG 92
>AT3G45150.1 | Symbols: TCP16 | TCP domain protein 16 |
chr3:16531179-16531676 FORWARD LENGTH=165
Length = 165
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 38/48 (79%)
Query: 101 KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
KDRH K+ GR RRIR+P A ++F+LT+ELG K+DG+T+ WLL+ AE
Sbjct: 18 KDRHLKIGGRDRRIRIPPSVAPQLFRLTKELGFKTDGETVSWLLQNAE 65
>AT3G18550.1 | Symbols: BRC1, TCP18, ATTCP18 | TCP family
transcription factor | chr3:6383769-6385604 FORWARD
LENGTH=433
Length = 433
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 50 IPRNSHCNKPYSHFSLH--LLTMSSSDGTTNGSMIDPQRTNQQQQ---LSVKKPPSKDRH 104
IP ++H P HF L+ ++ + T + D QR + Q KKP DRH
Sbjct: 95 IPNDNH--HPSLHFPLNNTIVEQPTEPSETINLIEDSQRISTSQDPKMKKAKKPSRTDRH 152
Query: 105 SKVDG----RGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 148
SK+ R RR+R+ + A +F L LG +T+EWLL QA+
Sbjct: 153 SKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAK 200