Miyakogusa Predicted Gene
- Lj0g3v0190769.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0190769.1 Non Chatacterized Hit- tr|F4JHF7|F4JHF7_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At4,51.52,3e-19,UNKNOWN PROTEIN,NULL; GAMMA TUBULIN COMPLEX
PROTEIN,Spc97/Spc98,CUFF.12086.1
(136 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80245.3 | Symbols: | Spc97 / Spc98 family of spindle pole b... 99 1e-21
AT1G80245.2 | Symbols: | Spc97 / Spc98 family of spindle pole b... 99 1e-21
AT1G80245.1 | Symbols: | Spc97 / Spc98 family of spindle pole b... 99 1e-21
AT4G00695.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 97 3e-21
AT4G00695.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 96 8e-21
AT4G00695.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 96 8e-21
>AT1G80245.3 | Symbols: | Spc97 / Spc98 family of spindle pole body
(SBP) component | chr1:30174547-30175217 FORWARD
LENGTH=127
Length = 127
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 10 TRVEDVAWLCSLSESEIDMLISLKLLIIRRAKMIDCKELANKFDLKMLRVIAFVLMEHLK 69
R +D+ W CSLSESE+D+LISLK L I+RAK+ +ELA+KFDLK+LR + VLMEH +
Sbjct: 11 NRTDDLTWFCSLSESELDLLISLKKLAIQRAKISGHQELADKFDLKLLRSLGLVLMEHAR 70
Query: 70 AEVK-DSSLIPDVVKSTAFLEACNLLQCNNEVAASIDEL 107
V+ D+SL P VV L+ CNLL+ + + A I+E+
Sbjct: 71 KRVQNDTSLAPSVVHQLRLLDNCNLLKTHVDDAVDIEEI 109
>AT1G80245.2 | Symbols: | Spc97 / Spc98 family of spindle pole body
(SBP) component | chr1:30174547-30175217 FORWARD
LENGTH=127
Length = 127
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 10 TRVEDVAWLCSLSESEIDMLISLKLLIIRRAKMIDCKELANKFDLKMLRVIAFVLMEHLK 69
R +D+ W CSLSESE+D+LISLK L I+RAK+ +ELA+KFDLK+LR + VLMEH +
Sbjct: 11 NRTDDLTWFCSLSESELDLLISLKKLAIQRAKISGHQELADKFDLKLLRSLGLVLMEHAR 70
Query: 70 AEVK-DSSLIPDVVKSTAFLEACNLLQCNNEVAASIDEL 107
V+ D+SL P VV L+ CNLL+ + + A I+E+
Sbjct: 71 KRVQNDTSLAPSVVHQLRLLDNCNLLKTHVDDAVDIEEI 109
>AT1G80245.1 | Symbols: | Spc97 / Spc98 family of spindle pole body
(SBP) component | chr1:30174547-30175217 FORWARD
LENGTH=127
Length = 127
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 10 TRVEDVAWLCSLSESEIDMLISLKLLIIRRAKMIDCKELANKFDLKMLRVIAFVLMEHLK 69
R +D+ W CSLSESE+D+LISLK L I+RAK+ +ELA+KFDLK+LR + VLMEH +
Sbjct: 11 NRTDDLTWFCSLSESELDLLISLKKLAIQRAKISGHQELADKFDLKLLRSLGLVLMEHAR 70
Query: 70 AEVK-DSSLIPDVVKSTAFLEACNLLQCNNEVAASIDEL 107
V+ D+SL P VV L+ CNLL+ + + A I+E+
Sbjct: 71 KRVQNDTSLAPSVVHQLRLLDNCNLLKTHVDDAVDIEEI 109
>AT4G00695.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
BEST Arabidopsis thaliana protein match is: Spc97 /
Spc98 family of spindle pole body (SBP) component
(TAIR:AT1G80245.3). | chr4:284129-285893 FORWARD
LENGTH=153
Length = 153
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 74/99 (74%), Gaps = 2/99 (2%)
Query: 11 RVEDVAWLCSLSESEIDMLISLKLLIIRRAKMIDCKEL-ANKFDLKMLRVIAFVLMEHLK 69
R +D+ W CSLSESE+D+LISLK L+IRRAK+ ++L A+KFDLKMLR + VLME+++
Sbjct: 12 RTDDLTWFCSLSESELDLLISLKKLVIRRAKVSGLEDLVADKFDLKMLRSLGLVLMEYVR 71
Query: 70 AEVK-DSSLIPDVVKSTAFLEACNLLQCNNEVAASIDEL 107
V+ D+SL P VV+ + L++CNLL+ + + I+E+
Sbjct: 72 KRVEDDTSLAPSVVQELSLLDSCNLLKTHVDDTVDIEEI 110
>AT4G00695.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: microtubule cytoskeleton organization;
LOCATED IN: spindle pole, microtubule organizing center;
EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s:
Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis
thaliana protein match is: Spc97 / Spc98 family of
spindle pole body (SBP) component (TAIR:AT1G80245.3);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr4:284129-284786 FORWARD
LENGTH=128
Length = 128
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 76/103 (73%), Gaps = 2/103 (1%)
Query: 11 RVEDVAWLCSLSESEIDMLISLKLLIIRRAKMIDCKEL-ANKFDLKMLRVIAFVLMEHLK 69
R +D+ W CSLSESE+D+LISLK L+IRRAK+ ++L A+KFDLKMLR + VLME+++
Sbjct: 12 RTDDLTWFCSLSESELDLLISLKKLVIRRAKVSGLEDLVADKFDLKMLRSLGLVLMEYVR 71
Query: 70 AEVK-DSSLIPDVVKSTAFLEACNLLQCNNEVAASIDELSMNV 111
V+ D+SL P VV+ + L++CNLL+ + + I+E+ ++
Sbjct: 72 KRVEDDTSLAPSVVQELSLLDSCNLLKTHVDDTVDIEEILTDI 114
>AT4G00695.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: microtubule cytoskeleton organization;
LOCATED IN: spindle pole, microtubule organizing center;
EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s:
Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis
thaliana protein match is: Spc97 / Spc98 family of
spindle pole body (SBP) component (TAIR:AT1G80245.3);
Has 27 Blast hits to 27 proteins in 8 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr4:284129-284786 FORWARD LENGTH=128
Length = 128
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 76/103 (73%), Gaps = 2/103 (1%)
Query: 11 RVEDVAWLCSLSESEIDMLISLKLLIIRRAKMIDCKEL-ANKFDLKMLRVIAFVLMEHLK 69
R +D+ W CSLSESE+D+LISLK L+IRRAK+ ++L A+KFDLKMLR + VLME+++
Sbjct: 12 RTDDLTWFCSLSESELDLLISLKKLVIRRAKVSGLEDLVADKFDLKMLRSLGLVLMEYVR 71
Query: 70 AEVK-DSSLIPDVVKSTAFLEACNLLQCNNEVAASIDELSMNV 111
V+ D+SL P VV+ + L++CNLL+ + + I+E+ ++
Sbjct: 72 KRVEDDTSLAPSVVQELSLLDSCNLLKTHVDDTVDIEEILTDI 114