Miyakogusa Predicted Gene

Lj0g3v0190229.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0190229.1 tr|F6HAA6|F6HAA6_VITVI Ubiquitin
carboxyl-terminal hydrolase OS=Vitis vinifera GN=VIT_06s0009g00890
,81.63,4e-17,Cysteine proteinases,NULL; UCH,Peptidase C19, ubiquitin
carboxyl-terminal hydrolase 2; SUBFAMILY NOT,TC64823.path1.1
         (52 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22030.1 | Symbols: UBP8 | ubiquitin-specific protease 8 | ch...    91   1e-19
AT5G22030.2 | Symbols: UBP8 | ubiquitin-specific protease 8 | ch...    91   1e-19
AT2G40930.1 | Symbols: UBP5, ATUBP5, PDE323 | ubiquitin-specific...    59   1e-09
AT5G46740.1 | Symbols: UBP21 | ubiquitin-specific protease 21 | ...    53   4e-08
AT4G10590.1 | Symbols: UBP10 | ubiquitin-specific protease 10 | ...    53   4e-08
AT4G10590.2 | Symbols: UBP10 | ubiquitin-specific protease 10 | ...    53   4e-08
AT1G32850.1 | Symbols: UBP11 | ubiquitin-specific protease 11 | ...    53   4e-08
AT4G10570.1 | Symbols: UBP9 | ubiquitin-specific protease 9 | ch...    52   9e-08
AT1G04860.1 | Symbols: UBP2, ATUBP2 | ubiquitin-specific proteas...    49   1e-06

>AT5G22030.1 | Symbols: UBP8 | ubiquitin-specific protease 8 |
           chr5:7290155-7296344 REVERSE LENGTH=913
          Length = 913

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/48 (77%), Positives = 45/48 (93%)

Query: 1   MGGGHYTAFVHHGGDQWYDFDDSRVYPISKEKIKSSAAYVLFYRRVFE 48
           MGGGHYTA+VHHGGD+WYDFDDS V+ IS+EKIK+SAAYVLFY+R+ +
Sbjct: 866 MGGGHYTAYVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKRLVD 913


>AT5G22030.2 | Symbols: UBP8 | ubiquitin-specific protease 8 |
           chr5:7290155-7296344 REVERSE LENGTH=913
          Length = 913

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/48 (77%), Positives = 45/48 (93%)

Query: 1   MGGGHYTAFVHHGGDQWYDFDDSRVYPISKEKIKSSAAYVLFYRRVFE 48
           MGGGHYTA+VHHGGD+WYDFDDS V+ IS+EKIK+SAAYVLFY+R+ +
Sbjct: 866 MGGGHYTAYVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKRLVD 913


>AT2G40930.1 | Symbols: UBP5, ATUBP5, PDE323 | ubiquitin-specific
           protease 5 | chr2:17076714-17082192 REVERSE LENGTH=924
          Length = 924

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 34/46 (73%), Gaps = 1/46 (2%)

Query: 1   MGGGHYTAFVHHGGD-QWYDFDDSRVYPISKEKIKSSAAYVLFYRR 45
           MG GHYTA +    D +WY+FDDS +  I+++ +KS AAYVLFYRR
Sbjct: 870 MGSGHYTAHIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRR 915


>AT5G46740.1 | Symbols: UBP21 | ubiquitin-specific protease 21 |
           chr5:18965410-18968492 REVERSE LENGTH=732
          Length = 732

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 31/42 (73%)

Query: 4   GHYTAFVHHGGDQWYDFDDSRVYPISKEKIKSSAAYVLFYRR 45
           GHY+++V    + W++FDDS+V  IS+E++ S  AY+LFY R
Sbjct: 427 GHYSSYVRSAPETWHNFDDSKVTRISEERVLSRPAYILFYAR 468


>AT4G10590.1 | Symbols: UBP10 | ubiquitin-specific protease 10 |
           chr4:6538919-6543272 REVERSE LENGTH=910
          Length = 910

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 5   HYTAFVHHGGD-QWYDFDDSRVYPISKEKIKSSAAYVLFYRRV 46
           HYTA+     D +WY FDDS V  +++ +IK+SAAYVLFYRRV
Sbjct: 852 HYTAYAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFYRRV 894


>AT4G10590.2 | Symbols: UBP10 | ubiquitin-specific protease 10 |
           chr4:6538919-6543272 REVERSE LENGTH=910
          Length = 910

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 5   HYTAFVHHGGD-QWYDFDDSRVYPISKEKIKSSAAYVLFYRRV 46
           HYTA+     D +WY FDDS V  +++ +IK+SAAYVLFYRRV
Sbjct: 852 HYTAYAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFYRRV 894


>AT1G32850.1 | Symbols: UBP11 | ubiquitin-specific protease 11 |
           chr1:11902629-11906900 FORWARD LENGTH=892
          Length = 892

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 34/43 (79%), Gaps = 1/43 (2%)

Query: 5   HYTAFVHHGGD-QWYDFDDSRVYPISKEKIKSSAAYVLFYRRV 46
           HYTA+     + +WY+FDDSRV  +++ +IK+SAAYVLFY+RV
Sbjct: 838 HYTAYAKLMDETKWYNFDDSRVSAVNESEIKTSAAYVLFYQRV 880


>AT4G10570.1 | Symbols: UBP9 | ubiquitin-specific protease 9 |
           chr4:6523657-6528058 REVERSE LENGTH=923
          Length = 923

 Score = 52.0 bits (123), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 5   HYTAFVHHGGD-QWYDFDDSRVYPISKEKIKSSAAYVLFYRRV 46
           HYTA+     D +WY FDDS V  +++ +I++SAAYVLFYRRV
Sbjct: 853 HYTAYAKLIDDNKWYHFDDSHVSSVNESEIRNSAAYVLFYRRV 895


>AT1G04860.1 | Symbols: UBP2, ATUBP2 | ubiquitin-specific protease 2
           | chr1:1369306-1372290 REVERSE LENGTH=961
          Length = 961

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 9/56 (16%)

Query: 1   MGGGHYTAFVHHG---------GDQWYDFDDSRVYPISKEKIKSSAAYVLFYRRVF 47
           M GGHY A+V  G            WY+  D+ V  +S EK+  S AY+LFY R+F
Sbjct: 903 MRGGHYVAYVRGGQRVKETDSSSTAWYNVSDAYVRQVSLEKVLHSEAYILFYERIF 958