Miyakogusa Predicted Gene

Lj0g3v0188979.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0188979.1 tr|F2DKN9|F2DKN9_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,57.83,4e-19,Aa_trans,Amino
acid transporter, transmembrane; seg,NULL; AMINO ACID
TRANSPORTER,NULL,27491_g.1
         (85 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80510.1 | Symbols:  | Transmembrane amino acid transporter f...   107   2e-24
AT3G30390.2 | Symbols:  | Transmembrane amino acid transporter f...    67   3e-12
AT3G30390.1 | Symbols:  | Transmembrane amino acid transporter f...    67   3e-12
AT5G38820.1 | Symbols:  | Transmembrane amino acid transporter f...    64   2e-11

>AT1G80510.1 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr1:30273100-30274569 FORWARD
           LENGTH=489
          Length = 489

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 62/85 (72%)

Query: 1   MALPATMKXXXXXXXXXXXXXXXXXSEISVELLVRFSVLCKASSYGEVVQHAMGKPVRIV 60
           MALPATMK                 SEISVELLVRFSVL K+ SYGEVVQ A+GK  R++
Sbjct: 94  MALPATMKVLGLVLGFVLIILMALLSEISVELLVRFSVLYKSKSYGEVVQFALGKTARVL 153

Query: 61  SEICIIMNNAGVMVVYLIIMGDVMS 85
           SEICII+NN GV+VVYLIIMGDVMS
Sbjct: 154 SEICIIVNNGGVLVVYLIIMGDVMS 178


>AT3G30390.2 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr3:11977112-11978827 REVERSE
           LENGTH=460
          Length = 460

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 52/85 (61%)

Query: 1   MALPATMKXXXXXXXXXXXXXXXXXSEISVELLVRFSVLCKASSYGEVVQHAMGKPVRIV 60
           MALPATMK                 ++ S+E L+RFS   K  SYG ++  + G P RI+
Sbjct: 62  MALPATMKILGLGLGITMIVVMAFLTDASIEFLLRFSKAGKNRSYGGLMGGSFGNPGRIL 121

Query: 61  SEICIIMNNAGVMVVYLIIMGDVMS 85
            ++ +++NN GV++VY+II+GDV++
Sbjct: 122 LQVAVLVNNIGVLIVYMIIIGDVLA 146


>AT3G30390.1 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr3:11977112-11978827 REVERSE
           LENGTH=460
          Length = 460

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 52/85 (61%)

Query: 1   MALPATMKXXXXXXXXXXXXXXXXXSEISVELLVRFSVLCKASSYGEVVQHAMGKPVRIV 60
           MALPATMK                 ++ S+E L+RFS   K  SYG ++  + G P RI+
Sbjct: 62  MALPATMKILGLGLGITMIVVMAFLTDASIEFLLRFSKAGKNRSYGGLMGGSFGNPGRIL 121

Query: 61  SEICIIMNNAGVMVVYLIIMGDVMS 85
            ++ +++NN GV++VY+II+GDV++
Sbjct: 122 LQVAVLVNNIGVLIVYMIIIGDVLA 146


>AT5G38820.1 | Symbols:  | Transmembrane amino acid transporter
           family protein | chr5:15543481-15545182 FORWARD
           LENGTH=456
          Length = 456

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 52/85 (61%)

Query: 1   MALPATMKXXXXXXXXXXXXXXXXXSEISVELLVRFSVLCKASSYGEVVQHAMGKPVRIV 60
           MALPATMK                 ++ S+E L+RFS +    SYG V+  + GK  RI+
Sbjct: 54  MALPATMKILGLIPGITIIVLMAFLTDASIEFLLRFSNIGNQRSYGGVMDDSFGKCGRIM 113

Query: 61  SEICIIMNNAGVMVVYLIIMGDVMS 85
            ++ I+++N GV++VY+II+GDV++
Sbjct: 114 LQVSILVSNIGVLIVYMIIIGDVLA 138