Miyakogusa Predicted Gene

Lj0g3v0188969.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0188969.1 Non Chatacterized Hit- tr|I1MSR6|I1MSR6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.19477
PE,63.16,0.0000000005,seg,NULL,CUFF.12027.1
         (189 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30260.1 | Symbols:  | Integral membrane Yip1 family protein ...    62   2e-10
AT2G18840.1 | Symbols:  | Integral membrane Yip1 family protein ...    59   2e-09

>AT4G30260.1 | Symbols:  | Integral membrane Yip1 family protein |
           chr4:14816890-14818722 REVERSE LENGTH=280
          Length = 280

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 34/55 (61%), Gaps = 14/55 (25%)

Query: 133 KISSSGFRLAPNTLTEPVRE--------------LVVFPNPYREDPGKALRDWDL 173
            I  SGF   PNTLTEPV +              LVVFPNPYREDPGKALRDWDL
Sbjct: 93  SIGGSGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDL 147


>AT2G18840.1 | Symbols:  | Integral membrane Yip1 family protein |
           chr2:8158288-8159848 FORWARD LENGTH=281
          Length = 281

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 33/52 (63%), Gaps = 14/52 (26%)

Query: 136 SSGFRLAPNTLTEPVRE--------------LVVFPNPYREDPGKALRDWDL 173
           +S F   PNTLTEPV +              LVVFPNPYREDPGKALRDWDL
Sbjct: 97  ASAFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDL 148