Miyakogusa Predicted Gene

Lj0g3v0188699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0188699.1 tr|B9N7R8|B9N7R8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_673686 PE=4
SV=1,73.25,0,Ribonuclease H-like,Ribonuclease H-like domain; C2H2 and
C2HC zinc fingers,NULL; BED zinc finger,Zin,CUFF.12024.1
         (676 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...   377   e-104
AT1G18560.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...   122   8e-28

>AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr3:14321838-14323928 FORWARD LENGTH=696
          Length = 696

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/668 (32%), Positives = 347/668 (51%), Gaps = 54/668 (8%)

Query: 1   MEIANDSGIKKP-------KRLTSVVWNHFERIRKADVCY-AVCVHCNKKLS---GSSNS 49
           +E+ ND+ +  P       ++  S+VW HF        C  A C  CN+  +   G+  +
Sbjct: 45  LEVYNDTEMVSPETQPIKRRKKKSMVWEHFTIEAVEPNCRRAFCKGCNQSFAYSNGNKVA 104

Query: 50  GTTHLRNHLIR-----CLKRANCDVSQLLTAKRRKKDNTVSVANIGFEEGQGKEEYIKPT 104
           GT+HL+ H+ +      +   + D + L++     K +T       +        Y+   
Sbjct: 105 GTSHLKRHIFKGTCPALIHTHDNDNNPLMSTPYTPKTDT---PRRRYRSQNNASPYVA-- 159

Query: 105 TIIKFEQDHKKDEIINFAGRRFDPEKSQLDLANMIMLHGYPLAMVEHVGFKVFVKNLQPL 164
               F QD  + EI                 A MI++H YPL MV+H GF  FV+++QP 
Sbjct: 160 ----FNQDKCRQEI-----------------AKMIIMHDYPLHMVQHPGFVSFVQSIQPH 198

Query: 165 FEFMPNSGIEVYCLKIYQREKERVYNMINKLHGRINLSIELWSSADNSSHLCIAAHYIDE 224
           F+ +  + ++  C+  Y  EK+ V   +  + GR  L+++ W+S     ++ I AHYID 
Sbjct: 199 FDAVSFNNVQGDCVATYLAEKQNVMKSLEGIPGRFCLTLDFWTSKLTLGYVFITAHYIDS 258

Query: 225 EWTLQKKVLNFVTLDPSHTEDLLPEAILKCLSEWDIECKLFAVTLDDFSINDDITVRIKE 284
           +W +QKK+LN +       ++ L  A+  C+SEW +E KLF VT +  + N  +   I+ 
Sbjct: 259 DWKIQKKLLNVLMESYPEADEALSLAVANCVSEWGLEGKLFNVTFNHPASNSAVE-NIRP 317

Query: 285 QASVKRPFLCTRQLLDVRSAAHLLNSMVQDALDALHEVIQKIRESIRYVRSSQVVQGKFN 344
           Q  +K P +   QL+     A    S+ +D L+   +VI+ IR+S+++V++S+  + +F 
Sbjct: 318 QLCIKNPGILDGQLVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHVKTSESHEERFT 377

Query: 345 EIALQAGVNSQKALLLDFPGQWNSIYLMLETALEYKTAFSIFQEQDPSYSSFLTEEEWEW 404
           E+  Q  V S+K L LD   QWN+ Y+ML  A E K  FS     DP Y    + E+W  
Sbjct: 378 ELKEQLQVPSEKVLSLDDQTQWNTTYMMLVAASELKEVFSCLDTADPDYKKPPSAEDWRH 437

Query: 405 ATSVTTYLKLILEITNVFSGNVFPTANIYFPEICDIHIQLIDWCRSSDNFLSSMAFKMKS 464
             ++ T+LK + E  +       P+A  +F E+      L       D F++ +A  M+ 
Sbjct: 438 VEALCTFLKPLFEAVSTLQSTGNPSAVTFFHEVWKTQSDLSRAIAGEDPFVTGIAKTMQE 497

Query: 465 RFDKYWSKCSLALAVAAILDPRFKMKLVEYYYSQIYGSTALDRIKEVSDSIKELFNAYSV 524
           + DKYW  CSL LA+A ++DPRFKMKLVE+ +S+I+G  A   IK V D I ELF  Y  
Sbjct: 498 KVDKYWRDCSLVLAMAVVMDPRFKMKLVEFSFSKIFGEDAGKNIKTVDDGIHELFTEYMA 557

Query: 525 CSTMVDQGSTLPGISLPSTSYDVRDRLKGFDKFLHDTSQGQNITSDLDKYLEEPIFPRNS 584
                     LP     ++     D L  FD ++ +T+ GQN+ S+LD+YL+E + PR  
Sbjct: 558 ----------LPSPQNTTSEGGKADGLSDFDTYIMETT-GQNLKSELDQYLDETLLPRVQ 606

Query: 585 DFNILNWWKVHMPRYPILSMMARDVLGTPMSTAAPDLAFSTGGRVLDPTRSSLSPDTRQA 644
           +F++L+WWK +  +YP LS MARD+L  P+S AA D  F    R +D  ++SL P+T +A
Sbjct: 607 EFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEA 666

Query: 645 LICTQDWL 652
           LIC ++WL
Sbjct: 667 LICAREWL 674


>AT1G18560.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr1:6385614-6388005 FORWARD LENGTH=690
          Length = 690

 Score =  122 bits (306), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 125/536 (23%), Positives = 238/536 (44%), Gaps = 51/536 (9%)

Query: 139 IMLHGYPLAMVEHVGFKVFVKNLQPLFEFMPNSGIEVYCLKIYQREKERVYNMINKLHGR 198
           + L   P + V+        K L+P  +  P    +    +++   +  V   +  +  +
Sbjct: 145 LALSSLPPSTVDETWLGNSFKFLKPSIQLWPAEKYKAILDEVFTSMRGDVKTTLEHIQSK 204

Query: 199 INLSIELWSSADNSSHLCIAAHYIDEEWTLQKKVLNFVTLD-PSHTEDLLPEAILKCLSE 257
           +++++  W+S +N  ++ +   +IDE W+  + +L+   +  PS   ++   ++LK L  
Sbjct: 205 VSVTLSFWNSYENIFYMSVTGQWIDENWSSHRLLLDICRIPYPSGGSEIY-NSLLKVLKT 263

Query: 258 WDIECKLFAVTLDDFSINDDITVRIKEQASVKR--PFLCTRQLLDVRSAAHLLNSMVQDA 315
           + IE ++   T D+          +KE    ++  PF        +  AA  LN ++ + 
Sbjct: 264 YAIEDRILCCTHDNSENAIHACHSLKEYFDGQKVLPFCY------IPCAAQTLNDIIDEG 317

Query: 316 LDALHEVIQKIRESIRYVRSSQVVQGKFNEI--ALQAGVNSQKALLLDFPGQWNSIYLML 373
           L  +  +I K+RE  + + +S  +   F ++  A Q G      L +D   +W+  Y M+
Sbjct: 318 LATIKPIISKVREFTQELNASTELSDDFIQLTTAYQEG---NWKLPIDASSRWSGNYQMV 374

Query: 374 ETALEY-KTAFSIFQEQDPSYSS--FLTEEEWEWATSVTTYLKL--ILEITNVFSGNVFP 428
               +  K+  S+ ++ + +  +   L+  E    T V  YL L    + TN    N   
Sbjct: 375 NILCKASKSLDSVIRKNEDALENRMMLSSVEKNAVTIVHNYLDLDSFHKTTNDMCTNKDL 434

Query: 429 TANIYFPEICDIHIQLIDWCRSS---DNFLSSMAFKMKSRFDKYWSK-CSLALAVAAILD 484
           T  +    + +I  ++I  C+ S    ++L + A  M  +   Y ++ C++   + AILD
Sbjct: 435 TVGLALLFMDNIS-EMITTCQKSCHNPDWLRTCAESMAQKARSYNTQVCNVFTYITAILD 493

Query: 485 PRFKMKLVEYYYSQIYGSTALDRIKEVSDSIKELFNAYSVCSTM-------VDQGSTLPG 537
           PR K    EY    I   + +D  +  S  I+   +++   S         VD+G    G
Sbjct: 494 PRIK---TEYIPETINLESYIDEAR--SHFIRNYSSSHFTSSMTSGYRPQEVDEG----G 544

Query: 538 ISLPSTSYDVRDRLKGFDKFLHDTSQGQNITSDLDKYLEEPIFPRNSDFNILNWWKVHMP 597
            ++       R + +G        S   N+  +L +YL E I P  +D  +L+WWKV+  
Sbjct: 545 GNISFAEEIARRKRRG--------SMSNNVVDELTQYLSESIVPMQTD--VLDWWKVNSG 594

Query: 598 RYPILSMMARDVLGTPMSTAAPDLAFSTGGRVLDPTRSSLSPDTRQALICTQDWLQ 653
           RYP LS MARD L    ++AAP+  F   G  +D  +  +  D+ Q++IC + W++
Sbjct: 595 RYPRLSNMARDFLAVQATSAAPEEIFCGKGEEIDKQKYCMPHDSTQSVICIRSWIE 650