Miyakogusa Predicted Gene

Lj0g3v0188299.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0188299.1 Non Chatacterized Hit- tr|K4AEL9|K4AEL9_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si037326,50,3e-19,SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN,SSXT;
SSXT,SSXT; seg,NULL,CUFF.12013.1
         (189 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00850.1 | Symbols: GIF3 | GRF1-interacting factor 3 | chr4:3...   110   4e-25
AT1G01160.1 | Symbols: GIF2 | GRF1-interacting factor 2 | chr1:7...   109   1e-24
AT1G01160.2 | Symbols: GIF2 | GRF1-interacting factor 2 | chr1:7...    91   4e-19
AT5G28640.1 | Symbols: AN3, GIF, GIF1, ATGIF1 | SSXT family prot...    82   2e-16

>AT4G00850.1 | Symbols: GIF3 | GRF1-interacting factor 3 |
           chr4:357675-358928 FORWARD LENGTH=223
          Length = 223

 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 85/158 (53%), Gaps = 22/158 (13%)

Query: 15  PSQNITTEQIQKFLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIAD----- 69
           P+ NITTEQIQK+LDENKKLI+AIL+NQNLGKLAECAQYQA LQKNLMYLAAIAD     
Sbjct: 17  PTNNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMYLAAIADAQPQP 76

Query: 70  ------SXXXXXXXXXXXXXXXXXXXGFYMQ--HPXXXXXXXXXGMFPQKMPMQFGNPHX 121
                 S                    ++MQ             G+FP + P+QFG+PH 
Sbjct: 77  PAATLTSGAMTPQAMAPNPSSMQPPPSYFMQQHQAVGMAQQIPPGIFPPRGPLQFGSPHQ 136

Query: 122 ------XXXXXXXXXXLGLRPGGMNNG---MHPMHSNE 150
                           +G+RP G+NN     H MH +E
Sbjct: 137 FLDPQQQLHQQAMQGHMGIRPMGLNNNNGLQHQMHHHE 174


>AT1G01160.1 | Symbols: GIF2 | GRF1-interacting factor 2 |
           chr1:72583-73883 FORWARD LENGTH=195
          Length = 195

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 85/156 (54%), Gaps = 24/156 (15%)

Query: 15  PSQNITTEQIQKFLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADSX--- 71
           P+ NITTEQIQK+LDENKKLI+AI++NQNLGKLAECAQYQA LQKNLMYLAAIAD+    
Sbjct: 18  PANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQPPP 77

Query: 72  -------XXXXXXXXXXXXXXXXXXGFYMQHPXXXXXXXXXGMFPQKMPMQFGNP----- 119
                                     ++MQHP         G+F  + P+QFG+P     
Sbjct: 78  PTPGPSPSTAVAAQMATPHSGMQPPSYFMQHP----QASPAGIFAPRGPLQFGSPLQFQD 133

Query: 120 ---HXXXXXXXXXXXLGLRPGGM-NNGM-HPMHSNE 150
                          +G+RP GM NNGM H M   E
Sbjct: 134 PQQQQQIHQQAMQGHMGIRPMGMTNNGMQHAMQQPE 169


>AT1G01160.2 | Symbols: GIF2 | GRF1-interacting factor 2 |
           chr1:72583-73883 FORWARD LENGTH=229
          Length = 229

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 85/190 (44%), Gaps = 58/190 (30%)

Query: 15  PSQNITTEQIQK----------------------------------FLDENKKLILAILD 40
           P+ NITTEQIQK                                  +LDENKKLI+AI++
Sbjct: 18  PANNITTEQIQKMLGGSGNFESGFQEWTLKLDACLMLLFCTFSWLDYLDENKKLIMAIME 77

Query: 41  NQNLGKLAECAQYQAQLQKNLMYLAAIADSXXXXXXXXXXXXXXXXXXXG---------- 90
           NQNLGKLAECAQYQA LQKNLMYLAAIAD+                              
Sbjct: 78  NQNLGKLAECAQYQALLQKNLMYLAAIADAQPPPPTPGPSPSTAVAAQMATPHSGMQPPS 137

Query: 91  FYMQHPXXXXXXXXXGMFPQKMPMQFGNP--------HXXXXXXXXXXXLGLRPGGM-NN 141
           ++MQHP         G+F  + P+QFG+P                    +G+RP GM NN
Sbjct: 138 YFMQHP----QASPAGIFAPRGPLQFGSPLQFQDPQQQQQIHQQAMQGHMGIRPMGMTNN 193

Query: 142 GM-HPMHSNE 150
           GM H M   E
Sbjct: 194 GMQHAMQQPE 203


>AT5G28640.1 | Symbols: AN3, GIF, GIF1, ATGIF1 | SSXT family
          protein | chr5:10647831-10649620 REVERSE LENGTH=210
          Length = 210

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 51/57 (89%), Gaps = 1/57 (1%)

Query: 14 FPSQNITTEQIQKFLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADS 70
          +PS N+T++ IQ++LDENK LIL I+++QN GKL+ECA+ QA+LQ+NLMYLAAIADS
Sbjct: 16 YPS-NVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADS 71