Miyakogusa Predicted Gene

Lj0g3v0188239.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0188239.1 Non Chatacterized Hit- tr|D3BB10|D3BB10_POLPA
Putative uncharacterized protein OS=Polysphondylium pa,39.75,6e-18,no
description,NULL; SUBFAMILY NOT NAMED,NULL; CARBON CATABOLITE
REPRESSOR PROTEIN 4,NULL; DNase I-l,CUFF.12021.1
         (215 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54130.4 | Symbols:  | Calcium-binding endonuclease/exonuclea...   248   3e-66
AT5G54130.2 | Symbols:  | Calcium-binding endonuclease/exonuclea...   247   5e-66
AT1G02270.1 | Symbols:  | Calcium-binding endonuclease/exonuclea...   241   2e-64
AT5G54130.3 | Symbols:  | Calcium-binding endonuclease/exonuclea...   238   3e-63

>AT5G54130.4 | Symbols:  | Calcium-binding
           endonuclease/exonuclease/phosphatase family |
           chr5:21962900-21964841 FORWARD LENGTH=351
          Length = 351

 Score =  248 bits (632), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/185 (65%), Positives = 144/185 (77%), Gaps = 5/185 (2%)

Query: 33  RVKKSGSFSALGEVNRDHS--CVSFTTFNILAPIYKRIDPQNQGLRESDTRSFWLARNQR 90
           R+ K GS++    +   H   C+S TTFNILAPIYKR+  ++Q LRESD R++WL RN R
Sbjct: 4   RISKIGSYAISSSIRDQHQQPCISCTTFNILAPIYKRLSHKDQSLRESDNRAYWLGRNHR 63

Query: 91  ILDGLLAESSSIMCLQEFWVGNEELVHMYEERLGNAGYHLFKLARTNNRGDGLLTAIHKE 150
           I+D LL E SSI+CLQEFWVGNEELV++YE+RLG+AGY  +KL RTNNRGDGLLTA+HK+
Sbjct: 64  IIDWLLYERSSIICLQEFWVGNEELVNLYEKRLGDAGYLSYKLGRTNNRGDGLLTAVHKD 123

Query: 151 YLSVVNYRELLFNDFGDRVAQLLHVQSAAPLLPNQKGSLHQEFLIVNTHLLFPHDSSLSI 210
           Y  VVN R+LLFND GDRVAQLLHV+   P     +   HQE LIVNTHLLFPHDS+LSI
Sbjct: 124 YFRVVNSRDLLFNDCGDRVAQLLHVELVPPY---SQYDAHQEVLIVNTHLLFPHDSTLSI 180

Query: 211 VRLQQ 215
           VRLQQ
Sbjct: 181 VRLQQ 185


>AT5G54130.2 | Symbols:  | Calcium-binding
           endonuclease/exonuclease/phosphatase family |
           chr5:21962900-21965279 FORWARD LENGTH=436
          Length = 436

 Score =  247 bits (630), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 121/185 (65%), Positives = 144/185 (77%), Gaps = 5/185 (2%)

Query: 33  RVKKSGSFSALGEVNRDHS--CVSFTTFNILAPIYKRIDPQNQGLRESDTRSFWLARNQR 90
           R+ K GS++    +   H   C+S TTFNILAPIYKR+  ++Q LRESD R++WL RN R
Sbjct: 4   RISKIGSYAISSSIRDQHQQPCISCTTFNILAPIYKRLSHKDQSLRESDNRAYWLGRNHR 63

Query: 91  ILDGLLAESSSIMCLQEFWVGNEELVHMYEERLGNAGYHLFKLARTNNRGDGLLTAIHKE 150
           I+D LL E SSI+CLQEFWVGNEELV++YE+RLG+AGY  +KL RTNNRGDGLLTA+HK+
Sbjct: 64  IIDWLLYERSSIICLQEFWVGNEELVNLYEKRLGDAGYLSYKLGRTNNRGDGLLTAVHKD 123

Query: 151 YLSVVNYRELLFNDFGDRVAQLLHVQSAAPLLPNQKGSLHQEFLIVNTHLLFPHDSSLSI 210
           Y  VVN R+LLFND GDRVAQLLHV+   P     +   HQE LIVNTHLLFPHDS+LSI
Sbjct: 124 YFRVVNSRDLLFNDCGDRVAQLLHVELVPPY---SQYDAHQEVLIVNTHLLFPHDSTLSI 180

Query: 211 VRLQQ 215
           VRLQQ
Sbjct: 181 VRLQQ 185


>AT1G02270.1 | Symbols:  | Calcium-binding
           endonuclease/exonuclease/phosphatase family |
           chr1:443301-446197 REVERSE LENGTH=484
          Length = 484

 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/165 (69%), Positives = 136/165 (82%)

Query: 51  SCVSFTTFNILAPIYKRIDPQNQGLRESDTRSFWLARNQRILDGLLAESSSIMCLQEFWV 110
           S +S TTFNILAPIYKR+D +N   RESD R+ WLARNQRILD LL + SS++CLQE WV
Sbjct: 69  SNISCTTFNILAPIYKRVDQKNHSTRESDFRTLWLARNQRILDLLLHQRSSVICLQEVWV 128

Query: 111 GNEELVHMYEERLGNAGYHLFKLARTNNRGDGLLTAIHKEYLSVVNYRELLFNDFGDRVA 170
           GNEELV+MY  +L ++GY +++LARTN+RGDGLLTAIHK++  VVNYRELLFNDFGDRVA
Sbjct: 129 GNEELVNMYHHQLSSSGYTIYQLARTNSRGDGLLTAIHKDHFKVVNYRELLFNDFGDRVA 188

Query: 171 QLLHVQSAAPLLPNQKGSLHQEFLIVNTHLLFPHDSSLSIVRLQQ 215
           QLLHV++  P   N K  + QE +IVNTHLLFPHDSSLSIVRL Q
Sbjct: 189 QLLHVKTVIPFPLNGKQDVQQEVIIVNTHLLFPHDSSLSIVRLHQ 233


>AT5G54130.3 | Symbols:  | Calcium-binding
           endonuclease/exonuclease/phosphatase family |
           chr5:21962900-21964841 FORWARD LENGTH=349
          Length = 349

 Score =  238 bits (606), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 119/185 (64%), Positives = 142/185 (76%), Gaps = 7/185 (3%)

Query: 33  RVKKSGSFSALGEVNRDHS--CVSFTTFNILAPIYKRIDPQNQGLRESDTRSFWLARNQR 90
           R+ K GS++    +   H   C+S TTFNILAPIYKR+  ++Q LRESD R++WL RN R
Sbjct: 4   RISKIGSYAISSSIRDQHQQPCISCTTFNILAPIYKRLSHKDQSLRESDNRAYWLGRNHR 63

Query: 91  ILDGLLAESSSIMCLQEFWVGNEELVHMYEERLGNAGYHLFKLARTNNRGDGLLTAIHKE 150
           I+D LL E SSI+CLQEFWVGNEELV++YE+RLG+AGY  +KL RTNNR  GLLTA+HK+
Sbjct: 64  IIDWLLYERSSIICLQEFWVGNEELVNLYEKRLGDAGYLSYKLGRTNNR--GLLTAVHKD 121

Query: 151 YLSVVNYRELLFNDFGDRVAQLLHVQSAAPLLPNQKGSLHQEFLIVNTHLLFPHDSSLSI 210
           Y  VVN R+LLFND GDRVAQLLHV+   P     +   HQE LIVNTHLLFPHDS+LSI
Sbjct: 122 YFRVVNSRDLLFNDCGDRVAQLLHVELVPPY---SQYDAHQEVLIVNTHLLFPHDSTLSI 178

Query: 211 VRLQQ 215
           VRLQQ
Sbjct: 179 VRLQQ 183