Miyakogusa Predicted Gene

Lj0g3v0187709.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0187709.1 Non Chatacterized Hit- tr|B7FHT8|B7FHT8_MEDTR
Putative uncharacterized protein (Fragment)
OS=Medicag,27.27,1e-18,seg,NULL; B3,B3 DNA binding domain; no
description,DNA-binding pseudobarrel domain; B3 DNA binding
d,CUFF.11941.1
         (500 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional...   118   1e-26
AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 | chr1...    70   3e-12
AT3G18960.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    69   6e-12
AT1G49475.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    65   8e-11
AT4G01580.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    65   9e-11
AT2G24690.1 | Symbols:  | Transcriptional factor B3 family prote...    51   2e-06
AT4G31640.1 | Symbols:  | transcriptional factor B3 family prote...    51   2e-06

>AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
           factor family protein | chr3:6549077-6551568 REVERSE
           LENGTH=341
          Length = 341

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 146/337 (43%), Gaps = 53/337 (15%)

Query: 24  KLKLPNGFIKKYSGDMPNPVILKPPDNTSWEIHWSKHDSDIWFQKGWEEFAKYYSLYHGH 83
           +L++P+ F+ K+  ++   V L  PD   W +   K D+ IWFQ GW+EF   YS+  G+
Sbjct: 19  RLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGY 78

Query: 84  LVLFEFKDASHFGVHIFDKSTLEIEYPMIYXXXXX-----XXXXXXXMSDNSVEILY--- 135
           L++F ++  S F V+IF+ S  EI Y                     + D   E+++   
Sbjct: 79  LLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFEDLEDEDAEVIFPSS 138

Query: 136 ---------EIPSWK-------KTKLKSPIAC--PQPSKKLRTRTSKDVGRSPKLQNLSK 177
                     +P+ K       +T    P+    P P+ K+           PK +   K
Sbjct: 139 VYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKI-----------PKKRGRKK 187

Query: 178 QVQTIEGIQSHVTNLEKSTLEPVHNELEDGAG--GSTECLKRDPLTSKTTKALNQARTFK 235
           +    E I S           P  ++ E+ +    S    KR     +  +A+N A+TF+
Sbjct: 188 KNADPEEINSSA---------PRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFE 238

Query: 236 SKNPSFVSVMKPAYIYRHS-LHVSSQFAKNSLKKKRDIILQVLDGSTWTVS--YKLG--K 290
             NP F  V++P+Y+YR   +++ S FA+  L      I   L    W V   YK G  K
Sbjct: 239 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQWPVRCLYKAGRAK 298

Query: 291 FTAGWKKFASDNKLKVGDVCRFELNKRGSLSLKALIF 327
           F+ GW +F  +N L  GDVC FEL +     LK   F
Sbjct: 299 FSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAF 335



 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 381 ALDEANKFTSENPCFKVTIQPD---RAGNYYRPHVTLTFMKKYLNKKKN-VMLQFGNNLW 436
           A++ A  F   NP F+V ++P    R    Y P     F +KYL+     + +Q     W
Sbjct: 230 AINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPS---GFAEKYLSGISGFIKVQLAEKQW 286

Query: 437 PVKLLHSASYGAKLSKGWALFAGESKLVAGDVCVFELINKEDAVFDVHIFK 487
           PV+ L+ A   AK S+GW  F  E+ L  GDVCVFEL+   D V  V  F+
Sbjct: 287 PVRCLYKAG-RAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFR 336


>AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 |
           chr1:18314596-18315460 REVERSE LENGTH=226
          Length = 226

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 58/111 (52%), Gaps = 8/111 (7%)

Query: 381 ALDEANKFTSENPCFKVTIQPD---RAGNYYRPHVTLTFMKKYLNKKKN-VMLQFGNNLW 436
           A++ A  F   NP F+V ++P    R    Y P     F +KYL+     + LQ G   W
Sbjct: 115 AVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPS---GFAEKYLSGISGFIKLQLGEKQW 171

Query: 437 PVKLLHSASYGAKLSKGWALFAGESKLVAGDVCVFELINKEDAVFDVHIFK 487
           PV+ L+ A   AK S+GW  F  E+ +  GDVCVFEL+   D V +V  F+
Sbjct: 172 PVRCLYKAGR-AKFSQGWYEFTLENNIGEGDVCVFELLRTRDFVLEVTAFR 221



 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 5/122 (4%)

Query: 211 STECLKRDPLTSKTTKALNQARTFKSKNPSFVSVMKPAYIYRHS-LHVSSQFAKNSLKKK 269
           S    KR     +  +A+N A+TF+  NP F  V++P+Y+YR   +++ S FA+  L   
Sbjct: 99  SASARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI 158

Query: 270 RDIILQVLDGSTWTVS--YKLG--KFTAGWKKFASDNKLKVGDVCRFELNKRGSLSLKAL 325
              I   L    W V   YK G  KF+ GW +F  +N +  GDVC FEL +     L+  
Sbjct: 159 SGFIKLQLGEKQWPVRCLYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFVLEVT 218

Query: 326 IF 327
            F
Sbjct: 219 AF 220


>AT3G18960.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr3:6542618-6543568 FORWARD LENGTH=209
          Length = 209

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%)

Query: 25  LKLPNGFIKKYSGDMPNPVILKPPDNTSWEIHWSKHDSDIWFQKGWEEFAKYYSLYHGHL 84
           +K+P  F+K     +   V L+ P      I   +   +IWF +GW EFA+ +S+  GH 
Sbjct: 44  MKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHF 103

Query: 85  VLFEFKDASHFGVHIFDKSTLEIEYPM 111
           +LFE+K+ S F V IF+ S  E +YP+
Sbjct: 104 LLFEYKENSSFRVIIFNVSACETKYPL 130


>AT1G49475.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr1:18312983-18313748 FORWARD LENGTH=190
          Length = 190

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 25  LKLPNGFIKKYSGDMPNPVILKPPDNTSWEIHWSKHDSDIWFQKGWEEFAKYYSLYHGHL 84
           +K+P  F++ +   + + V L+ P      I   +   ++WF+KGW EFA+ +SL  GH 
Sbjct: 48  MKVPARFVR-FGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHF 106

Query: 85  VLFEFKDASHFGVHIFDKSTLEIEYPM 111
           + F ++  S F V IFD S  EIEYP+
Sbjct: 107 LFFHYEGDSCFRVVIFDVSASEIEYPL 133


>AT4G01580.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:685791-686668 FORWARD LENGTH=190
          Length = 190

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%)

Query: 25  LKLPNGFIKKYSGDMPNPVILKPPDNTSWEIHWSKHDSDIWFQKGWEEFAKYYSLYHGHL 84
           +++P  F+K     +   V L  P      I   +   +IWF +GW EFA+ +S+  GH 
Sbjct: 44  MRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHF 103

Query: 85  VLFEFKDASHFGVHIFDKSTLEIEYPM 111
           +LFE+K  S F V IF+ S  E  YP+
Sbjct: 104 LLFEYKKNSSFRVIIFNASACETNYPL 130


>AT2G24690.1 | Symbols:  | Transcriptional factor B3 family protein
           | chr2:10499551-10503110 REVERSE LENGTH=777
          Length = 777

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 99/268 (36%), Gaps = 49/268 (18%)

Query: 233 TFKSKNPSFVSVMKPAYIYRHS-LHVSSQFAK-NSLKKKRDIILQVLDGSTWTVSYKL-- 288
           ++ S    FV+        RH  L +  QF + N + K   I L   DGS W  +  L  
Sbjct: 89  SYSSSEKQFVTFTLAPVDGRHCRLRLPMQFTRENGINKPGKIYLVGKDGSKWLANLLLEN 148

Query: 289 --GKFTAG--WKKFASDNKLKVGDVCRFELNKRGSLSLKALIF----------------P 328
             G+ T G  WK F   N LK GD   F+L    +  + +L F                 
Sbjct: 149 NRGRMTLGDGWKSFVKANGLKTGDTYTFKLLWEDTTPVLSLCFEEYNTDTRVGEESSKES 208

Query: 329 LAREPHSPQSQVQGDGANWRVQDTKSKTVTTTSRGGKATQQDSMLINPLTNGALDEANKF 388
           L  EP S +  V+ D       + K ++ T    G     +DS   +P            
Sbjct: 209 LPAEPSSQEKIVKDD-------NNKDESSTWKREGNHLRCKDS--TSP------------ 247

Query: 389 TSENPCFKVTIQPDRAGNYYRPHVTLTFM-KKYLNKKKNV-MLQFGNNLWPVKLLHSASY 446
            S+N    VTI PD    + R  + L FM +  +NK   + +L      W   LL     
Sbjct: 248 -SQNCTLTVTITPDSL-EHGRLRLPLQFMTENSMNKPGEITLLGTDGAKWMASLLLEKKG 305

Query: 447 GAKLSKGWALFAGESKLVAGDVCVFELI 474
              L KGW  FA  + L  GD    E I
Sbjct: 306 RMSLGKGWKDFAKANGLKTGDSITLEPI 333


>AT4G31640.1 | Symbols:  | transcriptional factor B3 family protein
           | chr4:15328357-15329658 FORWARD LENGTH=352
          Length = 352

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 26/199 (13%)

Query: 281 TWTVSYKLGKFTAGWKKFASDNKLKVGDVCRFELNKRGSLSLKALIFPLAREPHSPQSQV 340
           TW V  +  K T GWK+F   + L+VGD   F+ +K   L     I P   E       V
Sbjct: 56  TWKVKMEGHKLTEGWKEFVEAHDLRVGDFVVFK-HKGDMLFHVTAIGPSCCE-------V 107

Query: 341 QGDGANWRVQDTKSKTVTTTSRGGKATQQDSMLINPLTNGALDEANKFTSENPCFKVTIQ 400
           Q   +    ++ +S  +  +SR  K  +++             E ++F+ +  CF  ++ 
Sbjct: 108 QYAPSRSHDRNEESDEIGESSRNEKIIEEN----------VKTEPDQFSPDLTCFSQSVT 157

Query: 401 PDRAGNYYRPHVTL--TFMKKY---LNKKKNVMLQFGNNLWPVKLLHSASYGAKLSKGWA 455
              A N  R  V +   F K+Y   + + + V++    N W  ++    S    ++ GW 
Sbjct: 158 ---ASNLTRDLVGIPRDFAKRYGLNIGRHEIVLMDEEGNTWESEVKSYKSGRVFIAGGWT 214

Query: 456 LFAGESKLVAGDVCVFELI 474
                +KL  GD C F+L+
Sbjct: 215 SLCTANKLEVGDSCTFKLL 233