Miyakogusa Predicted Gene

Lj0g3v0187669.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0187669.1 Non Chatacterized Hit- tr|I0Z5K8|I0Z5K8_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,41.82,3e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
CDC27,DNA polymerase subunit Cdc27,CUFF.11933.1
         (120 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78650.1 | Symbols: POLD3 | DNA-directed DNA polymerases | ch...   162   6e-41

>AT1G78650.1 | Symbols: POLD3 | DNA-directed DNA polymerases |
           chr1:29582987-29585508 FORWARD LENGTH=509
          Length = 509

 Score =  162 bits (409), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 75/120 (62%), Positives = 95/120 (79%)

Query: 1   MAQTKTLALIDEIESLVSDKLQVVSYKWLSRSYMISSDEAKRLLQEFVQKHEGGLEVVYA 60
           M  T+TL L+DEIES VSD+LQVVSYKWLSR++ +SS+ AKRLL++FV+KH  GLEVVY 
Sbjct: 1   MTHTETLNLLDEIESFVSDQLQVVSYKWLSRNFSLSSNTAKRLLKDFVEKHGKGLEVVYI 60

Query: 61  LSGWLKSSHPSYHIRLVSGSKVAEAQKVFDGNCSVQVYSVQASIPKDPAVLWNTEFIQAE 120
           +SG LK+    YH RL S +++ E +K F+G  SV +YSVQASIP DPA +WNTEF+QAE
Sbjct: 61  VSGLLKNGPSDYHARLASSTELPEVEKEFNGKYSVHIYSVQASIPMDPAAIWNTEFVQAE 120