Miyakogusa Predicted Gene

Lj0g3v0187539.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0187539.1 Non Chatacterized Hit- tr|D8QRI3|D8QRI3_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,54.32,5e-19,AUTOPHAGY PROTEIN 12,Autophagy-related protein
12; Ubiquitin-like,NULL; APG12,Autophagy-related prot,CUFF.11935.1
         (94 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54210.1 | Symbols: APG12, ATG12A, ATATG12 | Ubiquitin-like s...   177   2e-45
AT3G13970.1 | Symbols: APG12, APG12B | Ubiquitin-like superfamil...   175   5e-45
AT1G54210.2 | Symbols: ATG12A | Ubiquitin-like superfamily prote...    75   6e-15

>AT1G54210.1 | Symbols: APG12, ATG12A, ATATG12 | Ubiquitin-like
          superfamily protein | chr1:20241278-20242020 FORWARD
          LENGTH=96
          Length = 96

 Score =  177 bits (448), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/91 (91%), Positives = 86/91 (94%)

Query: 4  ESPSSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRDTLFVYVNSAFS 63
           SPSSVRKVVVHLRATG APILKQSKFKI GTDKFAKVIDFLRRQLH D+LFVYVNSAFS
Sbjct: 6  SSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNSAFS 65

Query: 64 PNPDELIIDLYNNFGFDGKLIVNYACSMAWG 94
          PNPDE +IDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 66 PNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96


>AT3G13970.1 | Symbols: APG12, APG12B | Ubiquitin-like superfamily
          protein | chr3:4613696-4614794 REVERSE LENGTH=94
          Length = 94

 Score =  175 bits (444), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 79/94 (84%), Positives = 89/94 (94%)

Query: 1  MSVESPSSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRDTLFVYVNS 60
          M+ ESP+SV+K+VVHLRATG APILKQSKFK++G+DKFA VIDFLRRQLH D+LFVYVNS
Sbjct: 1  MATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNS 60

Query: 61 AFSPNPDELIIDLYNNFGFDGKLIVNYACSMAWG 94
          AFSPNPDE +IDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 61 AFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94


>AT1G54210.2 | Symbols: ATG12A | Ubiquitin-like superfamily
          protein | chr1:20241278-20242020 FORWARD LENGTH=52
          Length = 52

 Score = 75.5 bits (184), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 45/91 (49%), Gaps = 44/91 (48%)

Query: 4  ESPSSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRDTLFVYVNSAFS 63
           SPSSVRKVVVHLRATG APILKQSKFK                                
Sbjct: 6  SSPSSVRKVVVHLRATGGAPILKQSKFK-------------------------------- 33

Query: 64 PNPDELIIDLYNNFGFDGKLIVNYACSMAWG 94
                      NFGFDGKL+VNYACSMAWG
Sbjct: 34 ------------NFGFDGKLVVNYACSMAWG 52