Miyakogusa Predicted Gene

Lj0g3v0187429.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0187429.1 tr|G7JLJ2|G7JLJ2_MEDTR Pre-mRNA-splicing factor
ATP-dependent RNA helicase prp16 OS=Medicago truncat,87.23,0,SUBFAMILY
NOT NAMED,NULL; ATP-DEPENDENT RNA HELICASE,NULL; helicase superfamily
c-terminal domain,He,CUFF.11955.1
         (237 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protei...   258   2e-69
AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family prote...   127   8e-30
AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein | chr1...   127   8e-30
AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protei...   124   4e-29
AT3G26560.1 | Symbols:  | ATP-dependent RNA helicase, putative |...   117   5e-27
AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein | c...   109   2e-24
AT1G27900.1 | Symbols:  | RNA helicase family protein | chr1:971...   109   2e-24
AT3G62310.1 | Symbols:  | RNA helicase family protein | chr3:230...   100   8e-22
AT2G47250.1 | Symbols:  | RNA helicase family protein | chr2:193...   100   1e-21
AT2G01130.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...    99   3e-21
AT5G04895.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...    98   5e-21
AT1G26370.1 | Symbols:  | RNA helicase family protein | chr1:912...    96   3e-20
AT4G16680.1 | Symbols:  | P-loop containing nucleoside triphosph...    95   4e-20
AT1G48650.2 | Symbols:  | DEA(D/H)-box RNA helicase family prote...    95   4e-20
AT1G48650.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...    95   4e-20
AT2G35920.1 | Symbols:  | RNA helicase family protein | chr2:150...    94   1e-19
AT4G18465.1 | Symbols:  | RNA helicase family protein | chr4:101...    92   4e-19
AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase | chr1:204...    91   8e-19
AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissu...    88   6e-18
AT5G10370.1 | Symbols:  | helicase domain-containing protein / I...    87   7e-18
AT4G01020.1 | Symbols:  | helicase domain-containing protein / I...    86   2e-17
AT1G58050.1 | Symbols:  | RNA helicase family protein | chr1:214...    77   9e-15
AT1G58060.1 | Symbols:  | RNA helicase family protein | chr1:214...    68   6e-12
AT2G47680.1 | Symbols:  | zinc finger (CCCH type) helicase famil...    56   2e-08

>AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protein |
           chr1:12099738-12104108 REVERSE LENGTH=1237
          Length = 1237

 Score =  258 bits (660), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/221 (60%), Positives = 157/221 (71%), Gaps = 1/221 (0%)

Query: 1   MLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETY 60
           ML  AAQLRVFE V++EERLVVVATNVAETSLTIPGIKYVVDTGR KVK YDS  GME+Y
Sbjct: 655 MLSPAAQLRVFEEVEKEERLVVVATNVAETSLTIPGIKYVVDTGRVKVKNYDSKTGMESY 714

Query: 61  EVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKS 120
           EV WI                PGHCYRLYSSA F+N F + S  E+ KVPV GV+LL+KS
Sbjct: 715 EVDWISQASASQRAGRAGRTGPGHCYRLYSSAVFSNIFEESSLPEIMKVPVDGVILLMKS 774

Query: 121 MHIKKVANFPFPTSLKAASLLEAENCLKALEALDSKDDLTLLGKTMALYPLSPRHSRMIL 180
           M+I KV NFPFPT  + +++ EAE CLKALEALDS   LT LGK M+ YP+SPRHSRM+L
Sbjct: 775 MNIPKVENFPFPTPPEPSAIREAERCLKALEALDSNGGLTPLGKAMSHYPMSPRHSRMLL 834

Query: 181 TVIKNTRHGHEYN-PSLILXXXXXXXXXMSLPNPFAVQYEG 220
           TVI+  +    Y+  +LIL         +SLPNP  +++EG
Sbjct: 835 TVIQMLKETRNYSRANLILGYAVAAVAALSLPNPLIMEFEG 875


>AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family protein
           | chr1:11742356-11749286 REVERSE LENGTH=1044
          Length = 1044

 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 103/179 (57%)

Query: 2   LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
           LP+  Q ++FE   E  R VV+ATN+AETSLTI GIKYVVD G  K+K Y+   GME+  
Sbjct: 655 LPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLL 714

Query: 62  VQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSM 121
           +  I                PG CYRLY++  +NN+  + +  EV++  +  VVL LKS+
Sbjct: 715 ITPISKASATQRAGRAGRTSPGKCYRLYTAFNYNNDLEENTVPEVQRTNLASVVLALKSL 774

Query: 122 HIKKVANFPFPTSLKAASLLEAENCLKALEALDSKDDLTLLGKTMALYPLSPRHSRMIL 180
            I  + NF F     A +L+++   L AL AL+   +LT  G+ MA +PL P  S+MI+
Sbjct: 775 GIHDLINFDFMDPPPAEALVKSLELLFALGALNKLGELTKAGRRMAEFPLDPMLSKMIV 833


>AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein |
           chr1:11742356-11749286 REVERSE LENGTH=1034
          Length = 1034

 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 103/179 (57%)

Query: 2   LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
           LP+  Q ++FE   E  R VV+ATN+AETSLTI GIKYVVD G  K+K Y+   GME+  
Sbjct: 645 LPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLL 704

Query: 62  VQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSM 121
           +  I                PG CYRLY++  +NN+  + +  EV++  +  VVL LKS+
Sbjct: 705 ITPISKASATQRAGRAGRTSPGKCYRLYTAFNYNNDLEENTVPEVQRTNLASVVLALKSL 764

Query: 122 HIKKVANFPFPTSLKAASLLEAENCLKALEALDSKDDLTLLGKTMALYPLSPRHSRMIL 180
            I  + NF F     A +L+++   L AL AL+   +LT  G+ MA +PL P  S+MI+
Sbjct: 765 GIHDLINFDFMDPPPAEALVKSLELLFALGALNKLGELTKAGRRMAEFPLDPMLSKMIV 823


>AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protein |
           chr2:14872728-14879615 FORWARD LENGTH=1044
          Length = 1044

 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 102/179 (56%)

Query: 2   LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
           LP+  Q ++FE   E  R VV+ATN+AETSLTI GIKYVVD G  K+K Y+   GME+  
Sbjct: 655 LPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLL 714

Query: 62  VQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSM 121
           V  I                PG CYRLY++  + N+  D +  E+++  +  VVL LKS+
Sbjct: 715 VTPISKASATQRTGRAGRTSPGKCYRLYTAFNYYNDLEDNTVPEIQRTNLASVVLSLKSL 774

Query: 122 HIKKVANFPFPTSLKAASLLEAENCLKALEALDSKDDLTLLGKTMALYPLSPRHSRMIL 180
            I  + NF F     + +L+++   L AL AL+   +LT  G+ MA +PL P  S+MI+
Sbjct: 775 GIHNLLNFDFMDPPPSEALIKSLELLFALGALNQLGELTKAGRRMAEFPLDPMLSKMIV 833


>AT3G26560.1 | Symbols:  | ATP-dependent RNA helicase, putative |
           chr3:9750122-9753719 REVERSE LENGTH=1168
          Length = 1168

 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 99/182 (54%)

Query: 2   LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
           LP+  Q R+F+     +R VVVATN+AE SLTI GI YVVD G  K   Y+   G+E+  
Sbjct: 766 LPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLV 825

Query: 62  VQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSM 121
           +  I                PG CYRLY+ +A+ NE P  S  E++++ +    L +K+M
Sbjct: 826 ITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAM 885

Query: 122 HIKKVANFPFPTSLKAASLLEAENCLKALEALDSKDDLTLLGKTMALYPLSPRHSRMILT 181
            I  + +F F    +  +L+ A   L +L ALD +  LT LG+ MA +PL P  S+M+L 
Sbjct: 886 GINDLLSFDFMDPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLA 945

Query: 182 VI 183
            +
Sbjct: 946 SV 947


>AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein |
           chr5:4122747-4128660 FORWARD LENGTH=1255
          Length = 1255

 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 98/180 (54%)

Query: 1   MLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETY 60
            LPA  Q ++F+  ++  R  +VATN+AETSLT+ GI YV+DTG  K+K ++   GM+  
Sbjct: 812 QLPADLQAKIFQKPEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVFNPRMGMDAL 871

Query: 61  EVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKS 120
           +V  I                PG CYRLY+ +A+ NE       E+++  +  VVLLLKS
Sbjct: 872 QVFPISRAASDQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKS 931

Query: 121 MHIKKVANFPFPTSLKAASLLEAENCLKALEALDSKDDLTLLGKTMALYPLSPRHSRMIL 180
           + I  + +F F       ++L +   L  L AL++   LT LG  M  +PL P  ++M+L
Sbjct: 932 LKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLL 991


>AT1G27900.1 | Symbols:  | RNA helicase family protein |
           chr1:9715615-9720346 REVERSE LENGTH=700
          Length = 700

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 99/181 (54%), Gaps = 2/181 (1%)

Query: 2   LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
           LP   Q+RVF       R  +V+TN+AETSLT+ G+ YV+D+G  K ++Y+ S+GM + +
Sbjct: 257 LPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDSGYVKQRQYNPSSGMFSLD 316

Query: 62  VQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSM 121
           V  I                PG CYRLY  A + ++F D +  E+++  + G VL LKS+
Sbjct: 317 VIQISKVQANQRAGRAGRTRPGKCYRLYPLAVYRDDFLDATIPEIQRTSLAGSVLYLKSL 376

Query: 122 HIKKVA--NFPFPTSLKAASLLEAENCLKALEALDSKDDLTLLGKTMALYPLSPRHSRMI 179
            +  +    F F  +  + SL +A   L  ++A+D    +T +G+TM+  PL P  SR +
Sbjct: 377 DLPDIDILKFDFLDAPSSESLEDALKQLYFIDAIDENGAITRIGRTMSDLPLEPSLSRTL 436

Query: 180 L 180
           +
Sbjct: 437 I 437


>AT3G62310.1 | Symbols:  | RNA helicase family protein |
           chr3:23057516-23060561 REVERSE LENGTH=726
          Length = 726

 Score =  100 bits (249), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 94/186 (50%), Gaps = 7/186 (3%)

Query: 2   LPAAAQLRVFEGVKEE-------ERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSS 54
           LP A Q ++F+   E         R +VV+TN+AETSLTI GI YV+D G  K K Y+  
Sbjct: 318 LPPAMQQKIFDPAPEPVTEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPR 377

Query: 55  NGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGV 114
             +E+  V  I                PG C+RLY+  +FNN+    +  E+ +  +   
Sbjct: 378 IRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANT 437

Query: 115 VLLLKSMHIKKVANFPFPTSLKAASLLEAENCLKALEALDSKDDLTLLGKTMALYPLSPR 174
           VL LK + I  + +F F       +L+ A   L  L ALD   +LT  G+ M+ +PL P+
Sbjct: 438 VLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKTGEIMSEFPLDPQ 497

Query: 175 HSRMIL 180
            ++M++
Sbjct: 498 MAKMLI 503


>AT2G47250.1 | Symbols:  | RNA helicase family protein |
           chr2:19399923-19402981 REVERSE LENGTH=729
          Length = 729

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 94/186 (50%), Gaps = 7/186 (3%)

Query: 2   LPAAAQLRVFEGV-------KEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSS 54
           LP A Q ++F+             R +VV+TN+AETSLTI GI YV+D G  K K Y+  
Sbjct: 322 LPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPR 381

Query: 55  NGMETYEVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGV 114
             +E+  V  I                PG C+RLY+  +FNN+    +  E+ +  +   
Sbjct: 382 IRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANT 441

Query: 115 VLLLKSMHIKKVANFPFPTSLKAASLLEAENCLKALEALDSKDDLTLLGKTMALYPLSPR 174
           VL LK + I  + +F F       +L+ A   L  L ALD + +LT  G+ M+ +PL P+
Sbjct: 442 VLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKTGEIMSEFPLDPQ 501

Query: 175 HSRMIL 180
            S+M++
Sbjct: 502 MSKMLI 507


>AT2G01130.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr2:88847-94635 REVERSE LENGTH=1113
          Length = 1113

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 5/177 (2%)

Query: 7   QLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYEVQWIX 66
           Q  +FE      R +V+ATN+AETS+TI  + +V+D G+ K   YD+ N        WI 
Sbjct: 544 QRLIFEEPASGVRKIVLATNIAETSITINDVAFVIDCGKAKETSYDALNNTPCLLPSWIS 603

Query: 67  XXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSMHIKKV 126
                          PG CY LY    + + F +Y   E+ + P+H + L +KS+++  +
Sbjct: 604 KVSAQQRRGRAGRVRPGQCYHLYPKCVY-DAFAEYQLPEILRTPLHSLCLQIKSLNLGSI 662

Query: 127 ANFPFPTSLKAASLLEAENC---LKALEALDSKDDLTLLGKTMALYPLSPRHSRMIL 180
           + F    +L++  LL  +     LK + ALD  +DLT LG+ ++  P+ P+  +M++
Sbjct: 663 SEF-LSRALQSPELLAVQKAIAFLKIIGALDENEDLTTLGRYLSKLPMEPKLGKMLI 718


>AT5G04895.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr5:1428796-1434516 FORWARD LENGTH=1161
          Length = 1161

 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 5/182 (2%)

Query: 2   LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
           +  A Q  +FE      R +V+ATN+AE S+TI  + +VVD G+ K   YD+ N      
Sbjct: 580 MATAEQRLIFERAPPNIRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLL 639

Query: 62  VQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSM 121
             WI                PG CY LY    + + F +Y   E+ + P++ + L +KS+
Sbjct: 640 PSWISQASARQRRGRAGRLFPGECYHLYPKCVY-DAFAEYQLPELLRTPLNSLCLQIKSL 698

Query: 122 HIKKVANFPFPTSLKAASLLEAENC---LKALEALDSKDDLTLLGKTMALYPLSPRHSRM 178
            ++ +A F    +L+A   L  +N    LK + ALD K++LT LGK +++ P+ P+  +M
Sbjct: 699 QVESIAEF-LSAALQAPESLAVQNAIGFLKMIGALDEKENLTDLGKLLSILPVDPKLGKM 757

Query: 179 IL 180
           ++
Sbjct: 758 LI 759


>AT1G26370.1 | Symbols:  | RNA helicase family protein |
           chr1:9122030-9125368 REVERSE LENGTH=717
          Length = 717

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 94/182 (51%), Gaps = 6/182 (3%)

Query: 2   LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
           LP+  Q++VF       R V++ATN+AETS+TIPGI+YV+D G  K + YD S GME+ +
Sbjct: 334 LPSEQQMKVFAPAPTGFRKVILATNIAETSITIPGIRYVIDPGFVKARSYDPSKGMESLD 393

Query: 62  VQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSM 121
           V                   PG  +RLY    F  +  D +  E+++  +  ++L LK++
Sbjct: 394 VVPASKAQTLQRSGRAGREGPGKSFRLYPEREF-EKLEDSTKPEIKRCNLSNIILQLKAL 452

Query: 122 HIKKVANFPFPTSLKAASLLEAENCLKALEALDSKDDLTL---LGKTMALYPLSPRHSRM 178
            I  +  F F       ++++A   L +L AL   DD  L   +G  M+  PL P +S+ 
Sbjct: 453 GIDDIVGFDFIDKPSRGAIIKALAELHSLGAL--ADDGKLENPVGYQMSRLPLEPVYSKA 510

Query: 179 IL 180
           ++
Sbjct: 511 LI 512


>AT4G16680.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr4:9388613-9390774
           REVERSE LENGTH=656
          Length = 656

 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 83/162 (51%), Gaps = 10/162 (6%)

Query: 2   LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
           LP   Q +VFE   +  R VV+ATN+AETSLTI G+KYV+D G  K+  Y+   GME+  
Sbjct: 466 LPTPLQAKVFEPAPKGTRKVVLATNIAETSLTIDGVKYVIDPGYCKINSYNPRTGMESLL 525

Query: 62  VQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPA---EVEKVPVHGVVLLL 118
           V  I                PG C+RLY+         D  P    E+++  +  VVL L
Sbjct: 526 VTPISKASAAQRAGRSGRTGPGKCFRLYN-------IKDLEPTTIPEIQRANLASVVLTL 578

Query: 119 KSMHIKKVANFPFPTSLKAASLLEAENCLKALEALDSKDDLT 160
           KS+ I+ V NF F       +LL+A   L AL ALD   ++T
Sbjct: 579 KSLGIQDVFNFDFMDPPPENALLKALELLYALGALDEIGEIT 620


>AT1G48650.2 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr1:17989517-17995169 REVERSE LENGTH=1206
          Length = 1206

 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 5/182 (2%)

Query: 2   LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
           + ++ Q  +F+   E  R +V+ATN+AETS+TI  + YV+D G+ K   YD+ N      
Sbjct: 619 MASSEQRLIFDRPPEGIRKIVLATNMAETSITINDVVYVIDCGKAKETSYDALNNTPCLL 678

Query: 62  VQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSM 121
             WI                PG CY LY    +   F DY   E+ + P+  + L +KS+
Sbjct: 679 PSWISKAAARQRRGRAGRVMPGECYHLYPRCVY-EAFADYQQPELLRTPLQSLCLQIKSL 737

Query: 122 HIKKVANFPFPTSLKAASLLEAENC---LKALEALDSKDDLTLLGKTMALYPLSPRHSRM 178
            +  ++ F    +L+    L  +N    LK + ALD  ++LT LGK +++ P+ P+  +M
Sbjct: 738 GLGSISEF-LSRALQPPEALSVQNAVEYLKIIGALDDDENLTPLGKNLSMLPVEPKLGKM 796

Query: 179 IL 180
           ++
Sbjct: 797 LI 798


>AT1G48650.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr1:17989670-17995169 REVERSE LENGTH=1197
          Length = 1197

 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 5/182 (2%)

Query: 2   LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
           + ++ Q  +F+   E  R +V+ATN+AETS+TI  + YV+D G+ K   YD+ N      
Sbjct: 619 MASSEQRLIFDRPPEGIRKIVLATNMAETSITINDVVYVIDCGKAKETSYDALNNTPCLL 678

Query: 62  VQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSM 121
             WI                PG CY LY    +   F DY   E+ + P+  + L +KS+
Sbjct: 679 PSWISKAAARQRRGRAGRVMPGECYHLYPRCVY-EAFADYQQPELLRTPLQSLCLQIKSL 737

Query: 122 HIKKVANFPFPTSLKAASLLEAENC---LKALEALDSKDDLTLLGKTMALYPLSPRHSRM 178
            +  ++ F    +L+    L  +N    LK + ALD  ++LT LGK +++ P+ P+  +M
Sbjct: 738 GLGSISEF-LSRALQPPEALSVQNAVEYLKIIGALDDDENLTPLGKNLSMLPVEPKLGKM 796

Query: 179 IL 180
           ++
Sbjct: 797 LI 798


>AT2G35920.1 | Symbols:  | RNA helicase family protein |
           chr2:15075674-15080506 FORWARD LENGTH=995
          Length = 995

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 5/182 (2%)

Query: 2   LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
           +P   Q  +F+     +R +V+ATN+AE+S+TI  + YVVD G+ K   YD+ N +    
Sbjct: 544 MPTVNQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKVACLL 603

Query: 62  VQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSM 121
             WI                 G CYRLY    + + FP Y   E+ + P+  + L +KS+
Sbjct: 604 PSWISKASAHQRRGRAGRVQAGVCYRLYPKVIY-DAFPQYQLPEIIRTPLQELCLHIKSL 662

Query: 122 HIKKVANFPFPTSLKAASLLEAENC---LKALEALDSKDDLTLLGKTMALYPLSPRHSRM 178
            +  + +F    +L+    L  EN    LK + AL+  ++LT LG+ +   P+ P   +M
Sbjct: 663 QVGSIGSF-LAKALQPPDALAVENAIELLKTIGALNDVEELTPLGRHLCTLPVDPNIGKM 721

Query: 179 IL 180
           +L
Sbjct: 722 LL 723


>AT4G18465.1 | Symbols:  | RNA helicase family protein |
           chr4:10197056-10201611 FORWARD LENGTH=695
          Length = 695

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 1/180 (0%)

Query: 2   LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
           L  + Q  +F      +R V+++TN+AETSLT+ G+ YV+D+G  K K Y+  + +E+  
Sbjct: 318 LSRSEQELIFTPTPRGKRKVILSTNIAETSLTLEGVVYVIDSGFSKQKFYNPISDIESLV 377

Query: 62  VQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSM 121
           V  I                PG CYRLY+   F N+ P     E+++  +   V+ LK++
Sbjct: 378 VAPISKASARQRSGRAGRVRPGKCYRLYTEDYFLNQMPGEGIPEMQRSNLVSTVIQLKAL 437

Query: 122 HIKKVANFPFPTSLKAASLLEAENCLKALEALDSKDDLTL-LGKTMALYPLSPRHSRMIL 180
            I  +  F +P    + +++ A   L +L+ LD    LT   G  +A  PL P  S+MIL
Sbjct: 438 GIDNILGFDWPAPPSSEAMIRALEVLYSLQILDDDAKLTSPTGFQVAELPLDPMISKMIL 497


>AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase |
           chr1:2040567-2047333 FORWARD LENGTH=1576
          Length = 1576

 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 107/221 (48%), Gaps = 24/221 (10%)

Query: 2   LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
           +PA  Q +VF       R +V+ATN+AE+++TI  + YV+D+GR K K YD  N + T +
Sbjct: 616 VPAEEQKKVFNRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNDVSTLQ 675

Query: 62  VQWIXXXXXXXXXXXXXXXXPGHCYRLYSS--AAFNNEFPDYSPAEVEKVPVHGVVLLLK 119
             W+                 G CY LYS   AA     P+Y   EV ++PV  + L +K
Sbjct: 676 SSWVSKANAKQRAGRAGRCQAGICYHLYSKLRAA---SLPEYRVPEVMRMPVDELCLQVK 732

Query: 120 SMH--------IKKVANFPFPTSLKAASLLEAENCLKALEALDSKDDLTLLGKTMALYPL 171
            +         ++K+ + P   S++ A ++     LK + AL  +++LT LG+     P+
Sbjct: 733 MLDPNCNVNDFLQKLMDPPVAQSIENALII-----LKDIGALTPEEELTELGQKFGQLPV 787

Query: 172 SPRHSRMI-LTVIKNTRHGHEYNPSLILXXXXXXXXXMSLP 211
            PR S+MI   ++ N       +P+LIL          ++P
Sbjct: 788 HPRISKMIYFAILVNC-----LDPALILACAADEKDPFTMP 823


>AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissue
           and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299
          Length = 1299

 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 14/191 (7%)

Query: 1   MLPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETY 60
           M+PA  Q +VF       R +V+ATN+AE+++TI  + YV+D+GR K K YD  N + T 
Sbjct: 591 MVPAGEQKKVFNRPPPGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNNVSTL 650

Query: 61  EVQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKS 120
           +  W+                PG CY LYS     +  PD+   E++++PV  + L +K 
Sbjct: 651 QSSWVSKANAKQRQGRAGRCQPGICYHLYSRLRAAS-MPDFKVPEIKRMPVEELCLQVKI 709

Query: 121 MH--------IKKVANFPFPTSLKAASLLEAENCLKALEALDSKDDLTLLGKTMALYPLS 172
           +         ++K+ + P   S+  A  +     L+ + AL  +++LT LG+     P+ 
Sbjct: 710 LDPNCKTNDFLQKLLDPPVDQSIANALSI-----LQDIGALTPQEELTELGEKFGHLPVH 764

Query: 173 PRHSRMILTVI 183
           P  S+M+   +
Sbjct: 765 PLISKMLFFAV 775


>AT5G10370.1 | Symbols:  | helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           | chr5:3261245-3267188 FORWARD LENGTH=1775
          Length = 1775

 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 6/188 (3%)

Query: 7   QLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYEVQWIX 66
           Q RVF+      R V+ ATN+AETSLTIPG+KYV+D+G  K  KY+   GM   +V  + 
Sbjct: 563 QFRVFQN-HPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCRVS 621

Query: 67  XXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSMHIKKV 126
                          PG CYRLYS   F++   +  P E+ +V +   +L + ++ +  +
Sbjct: 622 QSSARQRAGRAGRTEPGRCYRLYSKNDFDSMNLNQEP-EIRRVHLGVALLRMLALGVNNI 680

Query: 127 ANFPFPTSLKAASLLEAENCLKALEALDSKD---DLTLLGKTMALYPLSPRHSRMILTVI 183
           A F F  +    ++  A   L  L A+  K+   +LT  G  +    L P+  ++IL   
Sbjct: 681 AEFNFVDAPVPEAIAMAVQNLVQLGAVVEKNGVHELTQEGHCLVKLGLEPKLGKLILGCF 740

Query: 184 KNTRHGHE 191
           ++ R G E
Sbjct: 741 RH-RMGKE 747


>AT4G01020.1 | Symbols:  | helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           | chr4:439086-445043 FORWARD LENGTH=1787
          Length = 1787

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 5/176 (2%)

Query: 19  RLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYEVQWIXXXXXXXXXXXXX 78
           R V+ ATN+AETSLTIPG+KYV+D+G  K  KY+   GM   +V  +             
Sbjct: 571 RKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCQVSQSSARQRAGRAG 630

Query: 79  XXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSMHIKKVANFPFPTSLKAA 138
              PG CYRLYS   F++   +  P E+ +V +   +L + ++ I  +A F F  +    
Sbjct: 631 RTEPGRCYRLYSKTDFDSMNLNQEP-EIRRVHLGVALLRMLALGIDNIAAFEFVDAPVPE 689

Query: 139 SLLEAENCLKALEALDSKD---DLTLLGKTMALYPLSPRHSRMILTVIKNTRHGHE 191
           ++  A   L  L A+  K+   +LT  G  +    L P+  ++IL   ++ R G E
Sbjct: 690 AIAMAIQNLVQLGAVVEKNGVLELTQEGHCLVKLGLEPKLGKLILGCFRH-RMGKE 744


>AT1G58050.1 | Symbols:  | RNA helicase family protein |
            chr1:21478590-21487839 REVERSE LENGTH=1417
          Length = 1417

 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 12/186 (6%)

Query: 2    LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
            + +  Q +VF    +  R V++ATN+AETS+TI  + YV+D+G+ K  +Y+    + +  
Sbjct: 923  IASTEQKKVFLRPPKGIRKVIIATNIAETSITIEDVVYVIDSGKHKENRYNPHKKLSSMV 982

Query: 62   VQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSM 121
              W+                PGHC+ LY+   F      Y   E+ +VP+  + L +K +
Sbjct: 983  EDWVSKANARQRMGRAGRVKPGHCFSLYTRHRFEKLMRPYQVPEMLRVPLVELCLHIKLL 1042

Query: 122  HIKKVANF-------PFPTSLKAASLLEAENCLKALEALDSKDDLTLLGKTMALYPLSPR 174
             + ++  F       P  +++ +A LL     L  + AL+  ++LT LG  +A  P+   
Sbjct: 1043 GLGQIKPFLSKALEPPSESAINSAILL-----LHKVGALEGDEELTPLGHHLAKLPVDLL 1097

Query: 175  HSRMIL 180
              +M+L
Sbjct: 1098 IGKMLL 1103


>AT1G58060.1 | Symbols:  | RNA helicase family protein |
            chr1:21489480-21501775 REVERSE LENGTH=1459
          Length = 1459

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 4/182 (2%)

Query: 2    LPAAAQLRVFEGVKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYE 61
            + ++ Q +VF    +  R V+ ATN+AETS+TI  + YV+D+G+ K  +Y+    + +  
Sbjct: 956  IASSEQRKVFLRPPKGLRKVIAATNIAETSITIDDVVYVIDSGKHKENRYNPQKKLSSMV 1015

Query: 62   VQWIXXXXXXXXXXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSM 121
              WI                PG C+ LY+   F      Y   E+ ++P+  + L +K +
Sbjct: 1016 EDWISQANARQRTGRAGRVKPGICFSLYTRYRFEKLMRPYQVPEMLRMPLVELCLQIKLL 1075

Query: 122  HIKKVANFPFPTSLK---AASLLEAENCLKALEALDSKDDLTLLGKTMALYPLSPRHSRM 178
             +  +  F    +L+     ++  A + L  + A++  ++LT LG  +A  P+     +M
Sbjct: 1076 GLGHIKPF-LSRALEPPSEGAMTSAISLLHEVGAVEGDEELTPLGHHLAKLPVDVLIGKM 1134

Query: 179  IL 180
            +L
Sbjct: 1135 LL 1136


>AT2G47680.1 | Symbols:  | zinc finger (CCCH type) helicase family
           protein | chr2:19545828-19550871 REVERSE LENGTH=1015
          Length = 1015

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 10/168 (5%)

Query: 14  VKEEERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYDSSNGMETYEVQWIXXXXXXXX 73
           +    R V++ATN+AE+S+TIP + YV+D+ R     +D S   +  ++ W+        
Sbjct: 317 ICRSRRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDPSRKRDAVQLVWVSRSQAEQR 376

Query: 74  XXXXXXXXPGHCYRLYSSAAFNNEFPDYSPAEVEKVPVHGVVLLLKSMHIKKV--ANFPF 131
                    G  YRL  SA F N+  ++ P  + K+ +   VL +     + +  AN   
Sbjct: 377 RGRTGRTCDGEVYRLVPSAFF-NKLEEHEPPSILKLSLRQQVLHICCTESRAINDANALL 435

Query: 132 PTSLKAASLLEAENCLKALEALDS-------KDDLTLLGKTMALYPLS 172
             ++        ++ L+ L ++ +       + + T  G+ +A +PLS
Sbjct: 436 AKAMDPPDPDVVDDALRMLLSIQALRKSPRGRYEPTFYGRLLASFPLS 483