Miyakogusa Predicted Gene

Lj0g3v0187299.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0187299.1 tr|F4JFQ3|F4JFQ3_ARATH Methyl-CpG-binding domain
protein 4 OS=Arabidopsis thaliana GN=At3g07930
PE=4,33.18,4e-18,seg,NULL; 5-METHYLCYTOSINE G/T MISMATCH-SPECIFIC DNA
GLYCOSYLASE,NULL,CUFF.11921.1
         (280 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07930.2 | Symbols:  | DNA glycosylase superfamily protein | ...   104   6e-23
AT3G07930.3 | Symbols:  | DNA glycosylase superfamily protein | ...    99   4e-21
AT3G07930.1 | Symbols:  | DNA glycosylase superfamily protein | ...    94   7e-20

>AT3G07930.2 | Symbols:  | DNA glycosylase superfamily protein |
           chr3:2526720-2528145 FORWARD LENGTH=358
          Length = 358

 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 111/214 (51%), Gaps = 46/214 (21%)

Query: 75  RNVSPYFQKSVITEEEVNEAETSNL-----------KVRKVSCYFGEAPKISPCCFQNEI 123
           R VSPYFQ S ++++     ++ ++           KV +VS YF +A  IS C   ++I
Sbjct: 147 RRVSPYFQGSTVSQQSKEGCDSDSVCSKEGCSKVQAKVPRVSPYF-QASTISQC--DSDI 203

Query: 124 GKMSVESAENG--YGNGVEISKPGIRSVNNNFK--------NEAETC------------- 160
               V S+++G  Y  G    +  +R V+  F+        N+A                
Sbjct: 204 ----VSSSQSGRNYRKGSSKRQVKVRRVSPYFQESTVSEQPNQAPKGLRNYFKVVKVSRY 259

Query: 161 -NLQGRKVSSKHIGKAKDKRK----NTTLSASQKWDEAYRKRTPDNTWVPPRSHLHLIQE 215
            +  G +V+     K+++ RK    +  LS SQK D+ Y ++TPDNTWVPPRS  +L+QE
Sbjct: 260 FHADGIQVNESQKEKSRNVRKTPIVSPVLSLSQKTDDVYLRKTPDNTWVPPRSPCNLLQE 319

Query: 216 DHIRDPWRVLVICMLLNITTGRQVCFTVGIDLHI 249
           DH  DPWRVLVICMLLN T+G QV    G D+ +
Sbjct: 320 DHWHDPWRVLVICMLLNKTSGAQVIADAGSDIRL 353


>AT3G07930.3 | Symbols:  | DNA glycosylase superfamily protein |
           chr3:2526720-2528416 FORWARD LENGTH=445
          Length = 445

 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 106/204 (51%), Gaps = 46/204 (22%)

Query: 75  RNVSPYFQKSVITEEEVNEAETSNL-----------KVRKVSCYFGEAPKISPCCFQNEI 123
           R VSPYFQ S ++++     ++ ++           KV +VS YF +A  IS C   ++I
Sbjct: 147 RRVSPYFQGSTVSQQSKEGCDSDSVCSKEGCSKVQAKVPRVSPYF-QASTISQC--DSDI 203

Query: 124 GKMSVESAENG--YGNGVEISKPGIRSVNNNFK--------NEAETC------------- 160
               V S+++G  Y  G    +  +R V+  F+        N+A                
Sbjct: 204 ----VSSSQSGRNYRKGSSKRQVKVRRVSPYFQESTVSEQPNQAPKGLRNYFKVVKVSRY 259

Query: 161 -NLQGRKVSSKHIGKAKDKRK----NTTLSASQKWDEAYRKRTPDNTWVPPRSHLHLIQE 215
            +  G +V+     K+++ RK    +  LS SQK D+ Y ++TPDNTWVPPRS  +L+QE
Sbjct: 260 FHADGIQVNESQKEKSRNVRKTPIVSPVLSLSQKTDDVYLRKTPDNTWVPPRSPCNLLQE 319

Query: 216 DHIRDPWRVLVICMLLNITTGRQV 239
           DH  DPWRVLVICMLLN T+G Q 
Sbjct: 320 DHWHDPWRVLVICMLLNKTSGAQT 343


>AT3G07930.1 | Symbols:  | DNA glycosylase superfamily protein |
           chr3:2526720-2528145 FORWARD LENGTH=352
          Length = 352

 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 104/200 (52%), Gaps = 46/200 (23%)

Query: 75  RNVSPYFQKSVITEEEVNEAETSNL-----------KVRKVSCYFGEAPKISPCCFQNEI 123
           R VSPYFQ S ++++     ++ ++           KV +VS YF +A  IS C   ++I
Sbjct: 147 RRVSPYFQGSTVSQQSKEGCDSDSVCSKEGCSKVQAKVPRVSPYF-QASTISQC--DSDI 203

Query: 124 GKMSVESAENG--YGNGVEISKPGIRSVNNNFK--------NEAETC------------- 160
               V S+++G  Y  G    +  +R V+  F+        N+A                
Sbjct: 204 ----VSSSQSGRNYRKGSSKRQVKVRRVSPYFQESTVSEQPNQAPKGLRNYFKVVKVSRY 259

Query: 161 -NLQGRKVSSKHIGKAKDKRK----NTTLSASQKWDEAYRKRTPDNTWVPPRSHLHLIQE 215
            +  G +V+     K+++ RK    +  LS SQK D+ Y ++TPDNTWVPPRS  +L+QE
Sbjct: 260 FHADGIQVNESQKEKSRNVRKTPIVSPVLSLSQKTDDVYLRKTPDNTWVPPRSPCNLLQE 319

Query: 216 DHIRDPWRVLVICMLLNITT 235
           DH  DPWRVLVICMLLN T+
Sbjct: 320 DHWHDPWRVLVICMLLNKTS 339