Miyakogusa Predicted Gene

Lj0g3v0187189.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0187189.2 tr|A9RJA3|A9RJA3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_159404,36.02,4e-17,UNCHARACTERIZED PUTATIVE
METHYLTRANSFERASE,NULL; SET domain,NULL; no
description,NULL,CUFF.11916.2
         (183 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14260.2 | Symbols:  | Rubisco methyltransferase family prote...   332   7e-92
AT5G14260.1 | Symbols:  | Rubisco methyltransferase family prote...   332   7e-92
AT5G14260.3 | Symbols:  | Rubisco methyltransferase family prote...   332   7e-92
AT3G07670.1 | Symbols:  | Rubisco methyltransferase family prote...    74   7e-14
AT3G55080.1 | Symbols:  | SET domain-containing protein | chr3:2...    52   2e-07
AT3G55080.2 | Symbols:  | SET domain-containing protein | chr3:2...    50   6e-07

>AT5G14260.2 | Symbols:  | Rubisco methyltransferase family protein
           | chr5:4601139-4603873 FORWARD LENGTH=514
          Length = 514

 Score =  332 bits (852), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 156/183 (85%), Positives = 165/183 (90%)

Query: 1   MYEKKQGKKSFWYPYIRELDRQRGRGQMAVESPLLWSESELAYLAGSPLKDEILKRIEGI 60
           MYEKKQGKKS WYPYIRELDRQRGRGQ+  ESPLLWSE+EL YL GSP K E+L+R EGI
Sbjct: 167 MYEKKQGKKSVWYPYIRELDRQRGRGQLDAESPLLWSEAELDYLTGSPTKAEVLERAEGI 226

Query: 61  KRGYDELDTVWCMSGSLFQQYPYDIPTEAFPFEIFKQAFAAIQSCVVHLQKVSLARRFAL 120
           KR Y+ELDTVW M+GSLFQQYP+DIPTEAF FEIFKQAF AIQSCVVHLQ V LARRFAL
Sbjct: 227 KREYNELDTVWFMAGSLFQQYPFDIPTEAFSFEIFKQAFVAIQSCVVHLQNVGLARRFAL 286

Query: 121 VPLGPPLLTYRSNCKAMLTAVEGAVELVVDRPYKAGDPIVVWCGPQPNTKLLTNYGFVDE 180
           VPLGPPLL Y SNCKAMLTAV+GAVELVVDRPYKAGDPIVVWCGPQPN KLL NYGFVDE
Sbjct: 287 VPLGPPLLAYCSNCKAMLTAVDGAVELVVDRPYKAGDPIVVWCGPQPNAKLLLNYGFVDE 346

Query: 181 ENP 183
           +NP
Sbjct: 347 DNP 349


>AT5G14260.1 | Symbols:  | Rubisco methyltransferase family protein
           | chr5:4601139-4603873 FORWARD LENGTH=514
          Length = 514

 Score =  332 bits (852), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 156/183 (85%), Positives = 165/183 (90%)

Query: 1   MYEKKQGKKSFWYPYIRELDRQRGRGQMAVESPLLWSESELAYLAGSPLKDEILKRIEGI 60
           MYEKKQGKKS WYPYIRELDRQRGRGQ+  ESPLLWSE+EL YL GSP K E+L+R EGI
Sbjct: 167 MYEKKQGKKSVWYPYIRELDRQRGRGQLDAESPLLWSEAELDYLTGSPTKAEVLERAEGI 226

Query: 61  KRGYDELDTVWCMSGSLFQQYPYDIPTEAFPFEIFKQAFAAIQSCVVHLQKVSLARRFAL 120
           KR Y+ELDTVW M+GSLFQQYP+DIPTEAF FEIFKQAF AIQSCVVHLQ V LARRFAL
Sbjct: 227 KREYNELDTVWFMAGSLFQQYPFDIPTEAFSFEIFKQAFVAIQSCVVHLQNVGLARRFAL 286

Query: 121 VPLGPPLLTYRSNCKAMLTAVEGAVELVVDRPYKAGDPIVVWCGPQPNTKLLTNYGFVDE 180
           VPLGPPLL Y SNCKAMLTAV+GAVELVVDRPYKAGDPIVVWCGPQPN KLL NYGFVDE
Sbjct: 287 VPLGPPLLAYCSNCKAMLTAVDGAVELVVDRPYKAGDPIVVWCGPQPNAKLLLNYGFVDE 346

Query: 181 ENP 183
           +NP
Sbjct: 347 DNP 349


>AT5G14260.3 | Symbols:  | Rubisco methyltransferase family protein
           | chr5:4601139-4603873 FORWARD LENGTH=514
          Length = 514

 Score =  332 bits (852), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 156/183 (85%), Positives = 165/183 (90%)

Query: 1   MYEKKQGKKSFWYPYIRELDRQRGRGQMAVESPLLWSESELAYLAGSPLKDEILKRIEGI 60
           MYEKKQGKKS WYPYIRELDRQRGRGQ+  ESPLLWSE+EL YL GSP K E+L+R EGI
Sbjct: 167 MYEKKQGKKSVWYPYIRELDRQRGRGQLDAESPLLWSEAELDYLTGSPTKAEVLERAEGI 226

Query: 61  KRGYDELDTVWCMSGSLFQQYPYDIPTEAFPFEIFKQAFAAIQSCVVHLQKVSLARRFAL 120
           KR Y+ELDTVW M+GSLFQQYP+DIPTEAF FEIFKQAF AIQSCVVHLQ V LARRFAL
Sbjct: 227 KREYNELDTVWFMAGSLFQQYPFDIPTEAFSFEIFKQAFVAIQSCVVHLQNVGLARRFAL 286

Query: 121 VPLGPPLLTYRSNCKAMLTAVEGAVELVVDRPYKAGDPIVVWCGPQPNTKLLTNYGFVDE 180
           VPLGPPLL Y SNCKAMLTAV+GAVELVVDRPYKAGDPIVVWCGPQPN KLL NYGFVDE
Sbjct: 287 VPLGPPLLAYCSNCKAMLTAVDGAVELVVDRPYKAGDPIVVWCGPQPNAKLLLNYGFVDE 346

Query: 181 ENP 183
           +NP
Sbjct: 347 DNP 349


>AT3G07670.1 | Symbols:  | Rubisco methyltransferase family protein
           | chr3:2451651-2454617 FORWARD LENGTH=504
          Length = 504

 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 21/181 (11%)

Query: 8   KKSFWYPYIRELDRQRGRGQMAVESPLLWSESEL-AYLAGSPLKDEILKRIEGIKRGYDE 66
           K S W+ YI  L RQ         S L W+ +EL  YL  S +++  ++RI  +   Y++
Sbjct: 162 KSSRWFNYISALPRQ-------PYSLLYWTRTELDMYLEASQIRERAIERITNVVGTYED 214

Query: 67  LDTVWCMSGSLFQQYPYDIPTEAFPFEIFKQAFAAIQSCVVHLQKVSLARRFALVPLGPP 126
           L +       +F ++P   P E F  E FK +F  + S +V L   S+  RFALVP    
Sbjct: 215 LRS------RIFSKHPQLFPKEVFNDETFKWSFGILFSRLVRLP--SMDGRFALVPWAD- 265

Query: 127 LLTYRSNCKAMLTAVEGA--VELVVDRPYKAGDPIVVWCGPQPNTKLLTNYGFVDEE--N 182
           +L +    +  L   + +  V    DRPY+ G+ + +  G + N +LL +YGFV  E  N
Sbjct: 266 MLNHNCEVETFLDYDKSSKGVVFTTDRPYQPGEQVFISYGNKSNGELLLSYGFVPREGTN 325

Query: 183 P 183
           P
Sbjct: 326 P 326


>AT3G55080.1 | Symbols:  | SET domain-containing protein |
           chr3:20411476-20415830 REVERSE LENGTH=463
          Length = 463

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 19/177 (10%)

Query: 3   EKKQGKKSFWYPYIRELDRQRGRGQMAVESPLLWSESELAYLAGSPLKDEILKRIEGIKR 62
           EKK G+KS W PYI  L +        + S + W E EL+ +  S +  E +K+   I++
Sbjct: 124 EKKMGQKSRWVPYISRLPQ-----PAEMHSSIFWGEDELSMIRCSAVHQETVKQKAQIEK 178

Query: 63  GYDELDTVWCMSGSLFQQYPYDIPTEAFPFEIFKQAFAAIQSCVVHLQKVSLARRFALVP 122
            +        ++ +  Q  P  I TE    E F  A+A + S     +    ++R +L+P
Sbjct: 179 DFS------FVAQAFKQHCP--IVTERPDLEDFMYAYALVGS-----RAWENSKRISLIP 225

Query: 123 LGPPLLTYRSNCKAMLTAVEGAV-ELVVDRPYKAGDPIVVWCGPQPNTKLLTNYGFV 178
               +     +   +L   +  + E+  DR Y  GD + +  G   N  L+ ++GF 
Sbjct: 226 FADFMNHDGLSASIVLRDEDNQLSEVTADRNYSPGDEVFIKYGEFSNATLMLDFGFT 282


>AT3G55080.2 | Symbols:  | SET domain-containing protein |
           chr3:20411476-20414595 REVERSE LENGTH=353
          Length = 353

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 26/183 (14%)

Query: 3   EKKQGKKSFWYPYIRELDRQRGRGQMAVESPLLWSESELAYLAGSPLKDEILKRIEGIKR 62
           EKK G+KS W PYI  L +        + S + W E EL+ +  S +  E +K+   I++
Sbjct: 9   EKKMGQKSRWVPYISRLPQ-----PAEMHSSIFWGEDELSMIRCSAVHQETVKQKAQIEK 63

Query: 63  GYDELDTVWCMSGSLFQQYPYDIPTEAFPFEIFKQAFAAIQSCVVHLQKVSLARRFALVP 122
            +        ++ +  Q  P  I TE    E F  A+A + S     +    ++R +L+P
Sbjct: 64  DFS------FVAQAFKQHCP--IVTERPDLEDFMYAYALVGS-----RAWENSKRISLIP 110

Query: 123 LGPPLLTYRSNCKAMLTAVE-------GAVELVVDRPYKAGDPIVVWCGPQPNTKLLTNY 175
                + +     +++   E         +++  DR Y  GD + +  G   N  L+ ++
Sbjct: 111 FA-DFMNHDGLSASIVLRDEDNQLSEFSTLQVTADRNYSPGDEVFIKYGEFSNATLMLDF 169

Query: 176 GFV 178
           GF 
Sbjct: 170 GFT 172