Miyakogusa Predicted Gene

Lj0g3v0186219.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0186219.1 Non Chatacterized Hit- tr|F4IN72|F4IN72_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At2,64.91,0.000000000000009,seg,NULL; RNase III
domain-like,Ribonuclease III domain; Ribonuclease III
family,Ribonuclease III
do,NODE_34288_length_1750_cov_19.158857.path1.1
         (538 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37510.1 | Symbols:  | Ribonuclease III family protein | chr4...   751   0.0  
AT2G48121.2 | Symbols:  | LOCATED IN: mitochondrion; BEST Arabid...   122   6e-28
AT2G48121.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    88   1e-17

>AT4G37510.1 | Symbols:  | Ribonuclease III family protein |
           chr4:17626259-17628854 REVERSE LENGTH=537
          Length = 537

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/505 (71%), Positives = 424/505 (83%), Gaps = 8/505 (1%)

Query: 36  ITTKTRHPTTQILRISAVAIDPPPQELPQNSPRRLLQELAEXXXXXXXXXXXX-XXFVLT 94
           I TK+R    Q LRI A ++    Q LP++SP+RLL+ELA+               F+L 
Sbjct: 39  ILTKSRF---QNLRICA-SVTAETQGLPRDSPQRLLKELAQRKTATGPKKKVPPKRFILR 94

Query: 95  PPVNDKKLANRLLNSPQLTLNNFPVLSSCLPYAKLNDNDNAWMEEHLMEAKQALGYPLEP 154
           PP++DKKLA R LNSPQL+L +FP+LSSCLP +KLN+ D  W++E+L+E KQALGY LEP
Sbjct: 95  PPLDDKKLAERFLNSPQLSLKSFPLLSSCLPSSKLNNADKTWIDEYLLEVKQALGYSLEP 154

Query: 155 SEEVMMGEGNPAKMLDTLLYLAFQHPKCERSRARHVRCAHSRLVFLGQYVLELALAEFFL 214
           SE   +G+ NPAK  DTLLYLAFQHP C+R+RARHV+  HSRL FLGQYVLELAL EFFL
Sbjct: 155 SES--LGDDNPAKHFDTLLYLAFQHPSCDRARARHVKNGHSRLWFLGQYVLELALTEFFL 212

Query: 215 QRYPRESPGPMRERVFGLIGKRSLPMWIKAASLQNLIFPNVNMDKLVRKDREPIVKSVFW 274
           QRYPRESPGPMRERVF LIGKR LP WIKAASLQNLIFP  +MDKL+RK+REP VKSVFW
Sbjct: 213 QRYPRESPGPMRERVFALIGKRYLPKWIKAASLQNLIFPYDDMDKLIRKEREPPVKSVFW 272

Query: 275 ALFGAIYLCFGMPEVYRVLFEVFGMDLEAEYCQPKLRRQLEDIDHVSAEFKGK-LSWQDV 333
           ALFGAIYLCFGMPEVYRVLFEVFGMD +A+ CQP+ RRQLED+D+VS EF+GK L WQD+
Sbjct: 273 ALFGAIYLCFGMPEVYRVLFEVFGMDPDADECQPRSRRQLEDVDYVSVEFEGKKLGWQDI 332

Query: 334 VAYKPPADALFANPRLFRACIPPGMHRFRGNIWDYDSRPQVMRILGYPLDMEDRIPGITD 393
             YKPP DALFA+PRLFRAC+PPGMHRFRGNIWD+DS+P+VM+ LGYPL M DRI  IT+
Sbjct: 333 ATYKPPEDALFAHPRLFRACVPPGMHRFRGNIWDFDSKPKVMQTLGYPLTMNDRIKEITE 392

Query: 394 ARNIELGLGLQLCFLHPSNYKFEHPRFCYERLEYLGQKIQDLVMAERLLMKHLDAPGFWI 453
           ARNIELGLGLQLCFLHPS +KFEHPRFC+ERLEY+GQKIQD+ MAERLLMKHLDAPG W+
Sbjct: 393 ARNIELGLGLQLCFLHPSKHKFEHPRFCFERLEYVGQKIQDIAMAERLLMKHLDAPGKWL 452

Query: 454 QEKHRRILMNKYCGRYLRAKQLHHYIIYSDKVKDAYGRSHRLRNPATTSVQQALHGLSYA 513
           QEKHRR+LMNK+CGRYLR K+LH++IIYS++V D Y  + RLRNPATT+VQQA+HGL+Y 
Sbjct: 453 QEKHRRLLMNKFCGRYLREKRLHNFIIYSEEVHDRYEHNRRLRNPATTAVQQAIHGLAYT 512

Query: 514 VYGKRDVRRLMFEVFDYEQVQPRTI 538
           +YGK DVRRLMFEVFD+EQ+QP+ +
Sbjct: 513 IYGKPDVRRLMFEVFDFEQIQPKAV 537


>AT2G48121.2 | Symbols:  | LOCATED IN: mitochondrion; BEST
           Arabidopsis thaliana protein match is: Ribonuclease III
           family protein (TAIR:AT4G37510.1). |
           chr2:19682096-19682329 FORWARD LENGTH=77
          Length = 77

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 68/77 (88%)

Query: 462 MNKYCGRYLRAKQLHHYIIYSDKVKDAYGRSHRLRNPATTSVQQALHGLSYAVYGKRDVR 521
           MNK+CGRYLR K+LH++IIYS++V D Y  + RLRNPATT+VQQA+HGL+Y +YGK DVR
Sbjct: 1   MNKFCGRYLREKRLHNFIIYSEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVR 60

Query: 522 RLMFEVFDYEQVQPRTI 538
           RLMFEVFD+EQ+QP+ +
Sbjct: 61  RLMFEVFDFEQIQPKAV 77


>AT2G48121.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: Ribonuclease III family protein (TAIR:AT4G37510.1).
           | chr2:19681680-19682329 FORWARD LENGTH=75
          Length = 75

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 49/57 (85%)

Query: 482 SDKVKDAYGRSHRLRNPATTSVQQALHGLSYAVYGKRDVRRLMFEVFDYEQVQPRTI 538
           +++V D Y  + RLRNPATT+VQQA+HGL+Y +YGK DVRRLMFEVFD+EQ+QP+ +
Sbjct: 19  TEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 75