Miyakogusa Predicted Gene
- Lj0g3v0185399.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0185399.1 Non Chatacterized Hit- tr|K4CG49|K4CG49_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,57.81,0.00000000000003,Myb_DNA-bind_4,NULL; coiled-coil,NULL;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL,CUFF.11786.1
(280 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G58630.1 | Symbols: | sequence-specific DNA binding transcri... 132 2e-31
AT3G14180.1 | Symbols: | sequence-specific DNA binding transcri... 115 5e-26
AT5G05550.1 | Symbols: | sequence-specific DNA binding transcri... 114 1e-25
AT5G05550.2 | Symbols: | sequence-specific DNA binding transcri... 113 1e-25
AT3G11100.1 | Symbols: | sequence-specific DNA binding transcri... 109 2e-24
AT1G54060.1 | Symbols: ASIL1 | 6B-interacting protein 1-like 1 |... 84 9e-17
AT3G54390.1 | Symbols: | sequence-specific DNA binding transcri... 84 9e-17
AT3G10030.2 | Symbols: | aspartate/glutamate/uridylate kinase f... 77 9e-15
AT3G10030.1 | Symbols: | aspartate/glutamate/uridylate kinase f... 77 1e-14
AT3G24490.1 | Symbols: | Alcohol dehydrogenase transcription fa... 63 2e-10
AT2G44730.1 | Symbols: | Alcohol dehydrogenase transcription fa... 61 7e-10
AT3G24860.1 | Symbols: | Homeodomain-like superfamily protein |... 50 1e-06
>AT3G58630.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr3:21683928-21685771 REVERSE
LENGTH=321
Length = 321
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 88/131 (67%), Gaps = 13/131 (9%)
Query: 1 MPDFHDSLTP-PSRPTPV---REDCWSEEASSTLVDAWGSRYLELNRGNLRQKDWQDVAD 56
M +DS +P SRP+P REDCWSEEA+ TL+ AWG+RY++L+RGNLRQK WQ+VA+
Sbjct: 1 MDTVNDSFSPGSSRPSPATLSREDCWSEEATFTLIQAWGNRYVDLSRGNLRQKHWQEVAN 60
Query: 57 AVNALHGHTKKT--------FRTDVQCKNRIDTIKKKYKIEKARXXXXX-XXXXXXWPFY 107
AVN H +T + +RTDVQCKNRIDT+KKKYK+EKAR WPF+
Sbjct: 61 AVNDRHYNTGRNVSAAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSESNPGAYISPWPFF 120
Query: 108 ERLDALIGPNF 118
LD L+ +F
Sbjct: 121 SALDDLLRESF 131
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 50/62 (80%)
Query: 208 EGLSRLAKAIERFGEVYERMEEQKVKQMVDLEKQRMQFTKDLELQRMQMFMDTQVQLERI 267
+G +A AIER G++YER+EE+K K+MV+LEKQRM+F K+LE RMQ+F + QV+L ++
Sbjct: 234 QGYKEVADAIERLGQIYERVEEKKRKEMVELEKQRMRFAKELECHRMQLFTEMQVRLHKL 293
Query: 268 KR 269
+R
Sbjct: 294 RR 295
>AT3G14180.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr3:4707290-4708621 REVERSE
LENGTH=443
Length = 443
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 74/106 (69%), Gaps = 5/106 (4%)
Query: 12 SRPTPV--REDCWSEEASSTLVDAWGSRYLELNRGNLRQKDWQDVADAVNALHGHTKKTF 69
RPT REDCWSE A++ L+DAWG RYLEL+RGNL+QK W++VA+ V++ + K
Sbjct: 72 GRPTGGGGREDCWSEAATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVSSREDYG-KIP 130
Query: 70 RTDVQCKNRIDTIKKKYKIEKARXXXXXXXXXXXWPFYERLDALIG 115
+TD+QCKNRIDT+KKKYK EK R W F+++LD LIG
Sbjct: 131 KTDIQCKNRIDTVKKKYKQEKVR--IANGGGRSRWVFFDKLDRLIG 174
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 63/87 (72%), Gaps = 8/87 (9%)
Query: 201 EVEEAEGEGLSR----LAKAIERFGEVYERMEEQKVKQMVDLEKQRMQFTKDLELQRMQM 256
E ++ +G+G+ L +AI RFGE YE+ E K++Q+V++EK+RM+F K+LELQRMQ
Sbjct: 337 EKKKQDGDGVGNKWRELTRAIMRFGEAYEQTENAKLQQVVEMEKERMKFLKELELQRMQF 396
Query: 257 FMDTQVQLERIKR--GKRSG--SNDMY 279
F+ TQ+++ ++K+ G+R G SND +
Sbjct: 397 FVKTQLEISQLKQQHGRRMGNTSNDHH 423
>AT5G05550.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr5:1639344-1640550 REVERSE
LENGTH=246
Length = 246
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 76/104 (73%), Gaps = 7/104 (6%)
Query: 13 RPTPVREDCWSEEASSTLVDAWGSRYLELNRGNLRQKDWQDVADAVNALHGHTKKTFRTD 72
RP RED WSEEA++TLV+AWG+RY++LN GNLRQ DW+DVADAVN+ HG + +TD
Sbjct: 15 RPPLGREDWWSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVNSRHGDNSRK-KTD 73
Query: 73 VQCKNRIDTIKKKYKIEKARXXXXXXXXXXXWPFYERLDALIGP 116
+QCKNR+DT+KKKYK EKA W FY RLD LIGP
Sbjct: 74 LQCKNRVDTLKKKYKTEKA------KLSPSTWRFYNRLDVLIGP 111
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 58/79 (73%)
Query: 198 RGSEVEEAEGEGLSRLAKAIERFGEVYERMEEQKVKQMVDLEKQRMQFTKDLELQRMQMF 257
R EV+ +EG LA AI +FGEVYER+E +K + M++LEKQRM+ TK++EL+RM M
Sbjct: 164 RVEEVDLSEGSTCRELATAILKFGEVYERIEGKKQQMMIELEKQRMEVTKEVELKRMNML 223
Query: 258 MDTQVQLERIKRGKRSGSN 276
M+ Q+++E+ K KR+ ++
Sbjct: 224 MEMQLEIEKSKHRKRASAS 242
>AT5G05550.2 | Symbols: | sequence-specific DNA binding
transcription factors | chr5:1639529-1640550 REVERSE
LENGTH=249
Length = 249
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 76/104 (73%), Gaps = 7/104 (6%)
Query: 13 RPTPVREDCWSEEASSTLVDAWGSRYLELNRGNLRQKDWQDVADAVNALHGHTKKTFRTD 72
RP RED WSEEA++TLV+AWG+RY++LN GNLRQ DW+DVADAVN+ HG + +TD
Sbjct: 15 RPPLGREDWWSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVNSRHGDNSRK-KTD 73
Query: 73 VQCKNRIDTIKKKYKIEKARXXXXXXXXXXXWPFYERLDALIGP 116
+QCKNR+DT+KKKYK EKA W FY RLD LIGP
Sbjct: 74 LQCKNRVDTLKKKYKTEKA------KLSPSTWRFYNRLDVLIGP 111
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 60/82 (73%)
Query: 198 RGSEVEEAEGEGLSRLAKAIERFGEVYERMEEQKVKQMVDLEKQRMQFTKDLELQRMQMF 257
R EV+ +EG LA AI +FGEVYER+E +K + M++LEKQRM+ TK++EL+RM M
Sbjct: 164 RVEEVDLSEGSTCRELATAILKFGEVYERIEGKKQQMMIELEKQRMEVTKEVELKRMNML 223
Query: 258 MDTQVQLERIKRGKRSGSNDMY 279
M+ Q+++E+ K KR+ ++ ++
Sbjct: 224 MEMQLEIEKSKHRKRASASVVW 245
>AT3G11100.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr3:3476490-3477320 REVERSE
LENGTH=249
Length = 249
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 75/99 (75%), Gaps = 9/99 (9%)
Query: 18 REDCWSEEASSTLVDAWGSRYLELNRGNLRQKDWQDVADAVNALHGHTKKTFRTDVQCKN 77
RED WSE+A++TL++AWG RY+ LNRGNLRQ DW++VADAVN+ HG+ + +TDVQCKN
Sbjct: 18 REDWWSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVNSSHGNGRP--KTDVQCKN 75
Query: 78 RIDTIKKKYKIEKARXXXXXXXXXXXWPFYERLDALIGP 116
RIDT+KKKYK EKA W F++RLD LIGP
Sbjct: 76 RIDTLKKKYKTEKA-------KPLSNWCFFDRLDFLIGP 107
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 55/76 (72%)
Query: 201 EVEEAEGEGLSRLAKAIERFGEVYERMEEQKVKQMVDLEKQRMQFTKDLELQRMQMFMDT 260
+V+ +EG LA++I + GE +ER+E +K + M++LEKQRM+ K+LELQRM M M+
Sbjct: 170 DVDSSEGSAFRELARSILKLGEAFERIEGKKQQMMIELEKQRMEVAKELELQRMNMLMEM 229
Query: 261 QVQLERIKRGKRSGSN 276
Q++LE+ K GKR ++
Sbjct: 230 QLELEKSKLGKRRAAS 245
>AT1G54060.1 | Symbols: ASIL1 | 6B-interacting protein 1-like 1 |
chr1:20180972-20182123 FORWARD LENGTH=383
Length = 383
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 65/98 (66%), Gaps = 4/98 (4%)
Query: 18 REDCWSEEASSTLVDAWGSRYLELNRGNLRQKDWQDVADAVNALHGHTKKTFRTDVQCKN 77
R+DCWSEEA+ L++AWG R+ E +G L+Q+ W++VA+ VN K +TD+QCKN
Sbjct: 90 RDDCWSEEATKVLIEAWGDRFSEPGKGTLKQQHWKEVAEIVN--KSRQCKYPKTDIQCKN 147
Query: 78 RIDTIKKKYKIEKARXXXXXXXXXXXWPFYERLDALIG 115
RIDT+KKKYK + + W F+++L++LIG
Sbjct: 148 RIDTVKKKYK--QEKAKIASGDGPSKWVFFKKLESLIG 183
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 214 AKAIERFGEVYERMEEQKVKQMVDLEKQRMQFTKDLELQRMQMFMDTQVQL 264
A+AI F E YE+ E K+K M +LEK+RM+F K++ELQRMQ F+ TQ+++
Sbjct: 298 ARAILGFTEAYEKAETAKLKLMAELEKERMKFAKEMELQRMQ-FLKTQLEI 347
>AT3G54390.1 | Symbols: | sequence-specific DNA binding
transcription factors | chr3:20137912-20138863 REVERSE
LENGTH=296
Length = 296
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 120/274 (43%), Gaps = 26/274 (9%)
Query: 5 HD-SLTPPSRPTPV----REDCWSEEASSTLVDAWGSRYLELNRGNLRQKDWQDVADAVN 59
HD SL PS + V + D WSE A STL++A+ S+++ NR L+ +DW+DVA V+
Sbjct: 16 HDESLKKPSASSVVVDRLKRDEWSEGAVSTLLEAYESKWVLRNRAKLKGQDWEDVAKHVS 75
Query: 60 ALHGHTKKTFRTDVQCKNRIDTIKKKYKIEKARXXXXXXXXXXXWPFYERLDALIGPNFN 119
+ HT K+ +T QCKN+I+++KK+Y+ E A WP Y RLD L+
Sbjct: 76 SRATHT-KSPKTQTQCKNKIESMKKRYRSESA------TADGSSWPLYPRLDHLL----- 123
Query: 120 XXXXXXXXXXXXXIALPL---LPHRKNSSPFPVIATPPTXXXXXXXXXXXXXXXXXXXXX 176
LPL +P P P +A PP
Sbjct: 124 ---RGTQPQPQPQAVLPLNCSVPLLLLEPPLPAVAHPPQISYGSNGVGKIPKEDGFKPEN 180
Query: 177 XXXXXXXXXXXXXXXXXXXXGRGSEVEEAEGEGLSRLAKAIERFGEVYERMEEQKVKQMV 236
RG +V+ E +A +I EV R E +++ M
Sbjct: 181 KPEKDAEMDTDSSTPVVKTKVRGKKVKRRYKEEKEEIAGSIRWLAEVVMRSERARMETMK 240
Query: 237 DLEKQRMQFTK---DLELQRMQMFMDTQVQLERI 267
++E+ R + +L+L+R ++ +TQ+++ RI
Sbjct: 241 EIERMRAEAEAKRGELDLKRTEIMANTQLEIARI 274
>AT3G10030.2 | Symbols: | aspartate/glutamate/uridylate kinase
family protein | chr3:3092618-3094831 REVERSE LENGTH=520
Length = 520
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 73/133 (54%), Gaps = 8/133 (6%)
Query: 22 WSEEASSTLVDAWGSRYLELNRGNLRQKDWQDVADAVNALHGHTKKTFRTDVQCKNRIDT 81
WS+ A + L+DA+ ++ +LNRGNLR +DW++VA +V+ +K ++ QCKN+ID
Sbjct: 161 WSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVSE---RCEKLSKSVEQCKNKIDN 217
Query: 82 IKKKYKIEKARXXXXXXXXXXXWPFYERLDALIGPNFNXXXXXXXXXXXXXIALPLLPHR 141
+KK+YK+E+ R WP++++++ ++G + + + P R
Sbjct: 218 LKKRYKLERHR-MSSGGTAASHWPWFKKMEDIVGNSLALKGASDEDRSGSSMGNTVKPAR 276
Query: 142 KNSSPFPVIATPP 154
+ +P++ P
Sbjct: 277 R----YPLVTYNP 285
>AT3G10030.1 | Symbols: | aspartate/glutamate/uridylate kinase
family protein | chr3:3092277-3094831 REVERSE LENGTH=542
Length = 542
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 73/133 (54%), Gaps = 8/133 (6%)
Query: 22 WSEEASSTLVDAWGSRYLELNRGNLRQKDWQDVADAVNALHGHTKKTFRTDVQCKNRIDT 81
WS+ A + L+DA+ ++ +LNRGNLR +DW++VA +V+ +K ++ QCKN+ID
Sbjct: 161 WSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVSE---RCEKLSKSVEQCKNKIDN 217
Query: 82 IKKKYKIEKARXXXXXXXXXXXWPFYERLDALIGPNFNXXXXXXXXXXXXXIALPLLPHR 141
+KK+YK+E+ R WP++++++ ++G + + + P R
Sbjct: 218 LKKRYKLERHR-MSSGGTAASHWPWFKKMEDIVGNSLALKGASDEDRSGSSMGNTVKPAR 276
Query: 142 KNSSPFPVIATPP 154
+ +P++ P
Sbjct: 277 R----YPLVTYNP 285
>AT3G24490.1 | Symbols: | Alcohol dehydrogenase transcription
factor Myb/SANT-like family protein |
chr3:8911022-8912023 FORWARD LENGTH=333
Length = 333
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 22 WSEEASSTLVDAWGSRYLELNRGNLRQKDWQDVADAVNALHGHTKKTFRTDVQCKNRIDT 81
W E+ + L++ WG R+L+L R +LR +DW +VA+ V+ + +++ QC+ ID
Sbjct: 90 WREQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVS----EELRMEKSETQCRRMIDD 145
Query: 82 IKKKYKIEKARXXXXXXXXXXXWPFYERLDALI 114
+K+KY+ EK + W F+ +LD L+
Sbjct: 146 LKRKYRKEKIK-VEKSGLGSSKWSFFNKLDMLL 177
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 41/56 (73%)
Query: 213 LAKAIERFGEVYERMEEQKVKQMVDLEKQRMQFTKDLELQRMQMFMDTQVQLERIK 268
LA ++ERFG+VYE+ME+ K +QM +LEK R F +DLELQ+ Q+ Q ++ R++
Sbjct: 247 LADSVERFGKVYEKMEKSKKEQMKELEKMRADFQRDLELQKKQIVDRAQSEIARLR 302
>AT2G44730.1 | Symbols: | Alcohol dehydrogenase transcription
factor Myb/SANT-like family protein |
chr2:18437447-18438565 REVERSE LENGTH=372
Length = 372
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 21 CWSEEASSTLVDAWGSRYLELNRGNLRQKDWQDVADAVNALHGHTKKTFRTDVQCKNRID 80
CWS E + L+DA+ ++ LNRGNL+ W++VA+AV A + +T VQC+++++
Sbjct: 63 CWSLEETIALIDAYRDKWYALNRGNLKANHWEEVAEAVGA-NCPDVILKKTAVQCRHKME 121
Query: 81 TIKKKYKIEKARXXXXXXXX-XXXWPFYERLDAL 113
++K+Y+ E R W ++R++A+
Sbjct: 122 KLRKRYRTEIQRARSVPVARFISSWVHFKRMEAM 155
>AT3G24860.1 | Symbols: | Homeodomain-like superfamily protein |
chr3:9073642-9074574 FORWARD LENGTH=310
Length = 310
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 21 CWSEEASSTLVDAWGSRYLELNRGNLRQKDWQDVADAVNALHGHTKKTFRTDVQCKNRID 80
W+++ + L++++ ++ + RG L+ W+++A A ++ G RT QC+++I+
Sbjct: 64 LWTQDETLLLIESYKEKWFAIGRGPLKSTHWEEIAVAASSRSG----VERTSTQCRHKIE 119
Query: 81 TIKKKYKIEKARXXXXXXXXXXXWPFYERLDALIGPN 117
++K+++ E+ WPFY +++ L N
Sbjct: 120 KMRKRFRSER-----QSMGPISIWPFYNQMEELDSSN 151