Miyakogusa Predicted Gene

Lj0g3v0185389.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0185389.1 Non Chatacterized Hit- tr|B9FKR2|B9FKR2_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,48.89,5e-17,seg,NULL; DUF4228,Protein of unknown function
DUF4228,CUFF.11775.1
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29195.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   165   2e-41
AT1G06980.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   113   7e-26
AT2G30230.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   109   1e-24

>AT1G29195.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4
           anthesis, C globular stage, 4 leaf senescence stage,
           petal differentiation and expansion stage; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins
           in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr1:10202673-10203254 REVERSE
           LENGTH=193
          Length = 193

 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 110/193 (56%), Gaps = 14/193 (7%)

Query: 13  MRNSIRCCISCILPCGALDVIRIVHCNGKVEEISGSIKASEIMKAHPKHVLKKPSSP-ST 71
           M+ +IRCCI+CILPCGALDVIRIVH NG VEEISG+I ASEIMKAHPKHVLKKPSSP S 
Sbjct: 1   MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSD 60

Query: 72  HDG----VVPKIVVVPPDAELQRGKIYFLMPLPSPAP-------XXXXXXXXXXXXXXXX 120
           HD        KIV+VPP+AELQRGKIYFLMP                             
Sbjct: 61  HDERDVISATKIVIVPPEAELQRGKIYFLMPATKSDKCAGGGKIRREKSNANAVVKKRSQ 120

Query: 121 XXXXXXXXXXXXXXXXXXXVYTANL--NLLVSNDRYLTEILSEKLSTQXXXXXXXXXXXX 178
                              V   N   +LL+S+DRYLTEILSEK++TQ            
Sbjct: 121 YRRQHRDGDEKCNGGESNDVKDKNYEKDLLISSDRYLTEILSEKVATQKDRRKGRVGVWR 180

Query: 179 PHLESISESPSSD 191
           PHLESISE  + D
Sbjct: 181 PHLESISEIITED 193


>AT1G06980.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: sepal, male gametophyte, carpel;
          EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana
          protein match is: unknown protein (TAIR:AT2G30230.1);
          Has 159 Blast hits to 159 proteins in 13 species:
          Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
          Plants - 159; Viruses - 0; Other Eukaryotes - 0
          (source: NCBI BLink). | chr1:2143248-2143757 REVERSE
          LENGTH=169
          Length = 169

 Score =  113 bits (283), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 69/86 (80%), Gaps = 4/86 (4%)

Query: 13 MRNSIRCCISCILPCGALDVIRIVHCNGKVEEISGSIKASEIMKAHPKHVLKKPSSPSTH 72
          M NS+RCC++C+LPCGALD+IRIVH NG VEEI+ SI A EI++A+P HVL KP S    
Sbjct: 1  MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCS---- 56

Query: 73 DGVVPKIVVVPPDAELQRGKIYFLMP 98
           GVV KI+++ P++EL+RG IYFL+P
Sbjct: 57 QGVVRKILILSPESELKRGSIYFLIP 82


>AT2G30230.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; BEST Arabidopsis thaliana protein match is:
          unknown protein (TAIR:AT1G06980.1); Has 167 Blast hits
          to 167 proteins in 14 species: Archae - 0; Bacteria -
          0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0;
          Other Eukaryotes - 0 (source: NCBI BLink). |
          chr2:12897156-12897689 FORWARD LENGTH=177
          Length = 177

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 68/86 (79%), Gaps = 4/86 (4%)

Query: 13 MRNSIRCCISCILPCGALDVIRIVHCNGKVEEISGSIKASEIMKAHPKHVLKKPSSPSTH 72
          M NS+RCC++C+LPCGALD+IRIVH NG V+EI+  + A EI++A+P HVL KP S    
Sbjct: 1  MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCS---- 56

Query: 73 DGVVPKIVVVPPDAELQRGKIYFLMP 98
           GVV KI+++ P++EL+RG IYFL+P
Sbjct: 57 QGVVRKILILSPESELKRGSIYFLIP 82