Miyakogusa Predicted Gene

Lj0g3v0185319.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0185319.1 Non Chatacterized Hit- tr|B8ALH3|B8ALH3_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,61.54,3e-19,seg,NULL; Mog1p/PsbP-like,Mog1/PsbP/DUF1795,
alpha/beta/alpha sandwich; no description,Mog1/PsbP, al,CUFF.11768.1
         (145 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39470.1 | Symbols: PPL2 | PsbP-like protein 2 | chr2:1647633...   146   4e-36
AT2G39470.2 | Symbols: PPL2 | PsbP-like protein 2 | chr2:1647633...   144   3e-35
AT2G39470.3 | Symbols: PPL2 | PsbP-like protein 2 | chr2:1647633...   143   4e-35
AT3G55330.1 | Symbols: PPL1 | PsbP-like protein 1 | chr3:2051403...    56   1e-08

>AT2G39470.1 | Symbols: PPL2 | PsbP-like protein 2 |
           chr2:16476335-16477653 FORWARD LENGTH=238
          Length = 238

 Score =  146 bits (369), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 78/149 (52%), Positives = 94/149 (63%), Gaps = 4/149 (2%)

Query: 1   MAVSSCSL--SWTSPCVSHKLNL--PHSNHLPRITSTSHSNNVSCAXXXXXXXXXHSQRR 56
           MAVSS S+     SP +SHK  +  P+ +       +S     S           + +RR
Sbjct: 1   MAVSSLSIRCGGFSPTISHKTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRR 60

Query: 57  LLLLGIGAITANLQPTRLLFAEEIPDRYRAFVDYSDGYSYVYPSDWKEFDFRAHDSAFKD 116
             L+G+G + A   P  LL AEEIP  Y  FVD  DGYSY YPSDW+EFDFRAHDSAFKD
Sbjct: 61  QALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKD 120

Query: 117 RYLQLQNVRVRFLPTEKKDIRDMGPIEEV 145
           RYLQLQNVRVRF+PTEK DI ++GP+EEV
Sbjct: 121 RYLQLQNVRVRFIPTEKNDIHEVGPMEEV 149


>AT2G39470.2 | Symbols: PPL2 | PsbP-like protein 2 |
           chr2:16476335-16477653 FORWARD LENGTH=230
          Length = 230

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/147 (52%), Positives = 94/147 (63%), Gaps = 8/147 (5%)

Query: 1   MAVSSCSL--SWTSPCVSHKLNLPHSNHLPRITSTSHSNNVSCAXXXXXXXXXHSQRRLL 58
           MAVSS S+     SP +SHK  +   N  P + +      +  +         + +RR  
Sbjct: 1   MAVSSLSIRCGGFSPTISHKTEILCPN--PSLKACC----LLSSGAYQKGSGNNWKRRQA 54

Query: 59  LLGIGAITANLQPTRLLFAEEIPDRYRAFVDYSDGYSYVYPSDWKEFDFRAHDSAFKDRY 118
           L+G+G + A   P  LL AEEIP  Y  FVD  DGYSY YPSDW+EFDFRAHDSAFKDRY
Sbjct: 55  LVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRY 114

Query: 119 LQLQNVRVRFLPTEKKDIRDMGPIEEV 145
           LQLQNVRVRF+PTEK DI ++GP+EEV
Sbjct: 115 LQLQNVRVRFIPTEKNDIHEVGPMEEV 141


>AT2G39470.3 | Symbols: PPL2 | PsbP-like protein 2 |
           chr2:16476335-16477402 FORWARD LENGTH=174
          Length = 174

 Score =  143 bits (360), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 77/147 (52%), Positives = 94/147 (63%), Gaps = 8/147 (5%)

Query: 1   MAVSSCSL--SWTSPCVSHKLNLPHSNHLPRITSTSHSNNVSCAXXXXXXXXXHSQRRLL 58
           MAVSS S+     SP +SHK  +   N  P + +      +  +         + +RR  
Sbjct: 1   MAVSSLSIRCGGFSPTISHKTEILCPN--PSLKACC----LLSSGAYQKGSGNNWKRRQA 54

Query: 59  LLGIGAITANLQPTRLLFAEEIPDRYRAFVDYSDGYSYVYPSDWKEFDFRAHDSAFKDRY 118
           L+G+G + A   P  LL AEEIP  Y  FVD  DGYSY YPSDW+EFDFRAHDSAFKDRY
Sbjct: 55  LVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRY 114

Query: 119 LQLQNVRVRFLPTEKKDIRDMGPIEEV 145
           LQLQNVRVRF+PTEK DI ++GP+EEV
Sbjct: 115 LQLQNVRVRFIPTEKNDIHEVGPMEEV 141


>AT3G55330.1 | Symbols: PPL1 | PsbP-like protein 1 |
           chr3:20514031-20515275 REVERSE LENGTH=230
          Length = 230

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 54  QRRLLL-LGIGA-ITANLQPTRLLFAEEIPDRYRAFVDYSDGYSYVYPSDWKEFDFRAHD 111
           QRRL++  G+ A   + L    L FA E    + A  D  D Y+++YP  W+E      D
Sbjct: 49  QRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQD 108

Query: 112 SAFKDRYLQLQNVRVRFLPTEKKDIRDMGPIEEV 145
             +KD    L++V V  +PT K+ I++ GP +++
Sbjct: 109 KVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQI 142