Miyakogusa Predicted Gene

Lj0g3v0185019.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0185019.1 Non Chatacterized Hit- tr|I1FVB4|I1FVB4_AMPQE
Uncharacterized protein OS=Amphimedon queenslandica
GN,25.7,0.000000000002,Vps39_2,Vacuolar sorting protein
39/Transforming growth factor beta receptor-associated domain 2;
TG,CUFF.11742.1
         (217 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36630.1 | Symbols: EMB2754 | Vacuolar sorting protein 39 | c...   239   1e-63

>AT4G36630.1 | Symbols: EMB2754 | Vacuolar sorting protein 39 |
           chr4:17272088-17276524 REVERSE LENGTH=1000
          Length = 1000

 Score =  239 bits (610), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/222 (55%), Positives = 161/222 (72%), Gaps = 6/222 (2%)

Query: 1   MSGYNPEALLKRLPSDALYEERAILLGKMNQHELTLSLYVHKLHVPELALSYCDRVYGS- 59
           +SGY+P+ LLKRLP DALYEERA++LGKMNQHEL LS+YVHKLH P+LAL+YCDR+Y S 
Sbjct: 708 ISGYSPQPLLKRLPRDALYEERAVILGKMNQHELALSIYVHKLHAPDLALAYCDRIYESV 767

Query: 60  THKPSVTSPSNIYLMLLQIYLNPRRTTKNYEKRITNLLSPRSTTLPRANSKILLKTRSRG 119
           T+ PS    SNIYL +LQIYLNP+++ K++ KRI  L S  S+   +    + L ++++G
Sbjct: 768 TYLPSGKPSSNIYLTVLQIYLNPKKSAKDFAKRIVALGSFESSDTTKMMDSV-LSSKAKG 826

Query: 120 --SKKIASIDVAEDIXXXXXXXXXXXXXXXXXEFP--EGGTSIMLDEAIDLLSRRWDRIN 175
             SKKI +I+ AED+                 E P  EG +++M+ E +DLLS+RW+RIN
Sbjct: 827 GRSKKIVAIEGAEDMRVGLSSSTDSGRSDVDTEEPLEEGDSTVMISEVLDLLSQRWERIN 886

Query: 176 GAQALKLLPKETKLQNLLSFLGPLLRKSSEMYRNCSVVQSLR 217
           GAQALKLLP+ETKL NLL FL PLLR SSE +RN SV++SLR
Sbjct: 887 GAQALKLLPRETKLHNLLPFLAPLLRNSSEAHRNFSVIKSLR 928