Miyakogusa Predicted Gene

Lj0g3v0184659.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0184659.1 Non Chatacterized Hit- tr|C5Y130|C5Y130_SORBI
Putative uncharacterized protein Sb04g017380
OS=Sorghu,38.05,8e-19,GLR3409 PROTEIN,NULL; ATP-DEPENDENT CLP
PROTEASE,NULL; no description,Double Clp-N motif; seg,NULL;
,CUFF.11717.1
         (247 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29970.1 | Symbols:  | Double Clp-N motif-containing P-loop n...   233   1e-61
AT1G07200.2 | Symbols:  | Double Clp-N motif-containing P-loop n...   228   4e-60
AT2G40130.2 | Symbols:  | Double Clp-N motif-containing P-loop n...   204   4e-53
AT2G40130.1 | Symbols:  | Double Clp-N motif-containing P-loop n...   204   6e-53
AT5G57710.1 | Symbols:  | Double Clp-N motif-containing P-loop n...    98   4e-21
AT3G52490.1 | Symbols:  | Double Clp-N motif-containing P-loop n...    86   2e-17
AT4G29920.1 | Symbols:  | Double Clp-N motif-containing P-loop n...    81   6e-16
AT5G57130.1 | Symbols:  | Clp amino terminal domain-containing p...    79   3e-15
AT4G30350.1 | Symbols:  | Double Clp-N motif-containing P-loop n...    78   5e-15

>AT2G29970.1 | Symbols:  | Double Clp-N motif-containing P-loop
           nucleoside triphosphate hydrolases superfamily protein |
           chr2:12776601-12779784 FORWARD LENGTH=1002
          Length = 1002

 Score =  233 bits (593), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/251 (53%), Positives = 156/251 (62%), Gaps = 12/251 (4%)

Query: 1   MPTSVSAARQCLTDEAARALDDAVSVARRRSHAQTTSLHAVSALLSLPTSALRDACAR-- 58
           MPT V+ ARQCLT+E ARALDDAVSVARRRSHAQTTSLHAVS LL++P+S LR+ C    
Sbjct: 1   MPTPVTTARQCLTEETARALDDAVSVARRRSHAQTTSLHAVSGLLTMPSSILREVCISRA 60

Query: 59  AGSCSYSPRLQLRALELSVGVSLDRQTTSKSA-NDGGDDGPPVSNSLMXXXXXXXXXXXX 117
           A +  YS RLQ RALEL VGVSLDR  +SKS      ++ PPVSNSLM            
Sbjct: 61  AHNTPYSSRLQFRALELCVGVSLDRLPSSKSTPTTTVEEDPPVSNSLMAAIKRSQATQRR 120

Query: 118 HPESFHXXXXXXXXXXSQTASLLKAELKHFILSILDDPIVSRVFAEAGFRSYDIKLALLQ 177
           HPE++H          ++T S+LK ELK+FILSILDDPIVSRVF EAGFRS DIKL +L 
Sbjct: 121 HPETYH-LHQIHGNNNTETTSVLKVELKYFILSILDDPIVSRVFGEAGFRSTDIKLDVLH 179

Query: 178 XXXXXXXXXXXXXXXXXXXXXXXXXXLCNI---DPARSGFPFALSGSDDNSRRIAEVLAR 234
                                     LCN+   D  R  F F     D+N RRI EVLAR
Sbjct: 180 -----PPVTSQFSSRFTSRSRIPPLFLCNLPESDSGRVRFGFPFGDLDENCRRIGEVLAR 234

Query: 235 KSKRNPLLMGV 245
           K K+NPLL+GV
Sbjct: 235 KDKKNPLLVGV 245


>AT1G07200.2 | Symbols:  | Double Clp-N motif-containing P-loop
           nucleoside triphosphate hydrolases superfamily protein |
           chr1:2209033-2212316 REVERSE LENGTH=979
          Length = 979

 Score =  228 bits (580), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 138/253 (54%), Positives = 160/253 (63%), Gaps = 20/253 (7%)

Query: 1   MPTSVSAARQCLTDEAARALDDAVSVARRRSHAQTTSLHAVSALLSLPTSALRDACAR-- 58
           MPT V+ AR+CLT+EAARALDDAV VARRRSHAQTTSLHAVSALL++P+S LR+ C    
Sbjct: 1   MPTPVTTARECLTEEAARALDDAVVVARRRSHAQTTSLHAVSALLAMPSSILREVCVSRA 60

Query: 59  AGSCSYSPRLQLRALELSVGVSLDRQTTSKSANDGGDDGPPVSNSLMXXXXXXXXXXXXH 118
           A S  YS RLQ RALEL VGVSLDR  +SKS     ++ PPVSNSLM            H
Sbjct: 61  ARSVPYSSRLQFRALELCVGVSLDRLPSSKSP--ATEEDPPVSNSLMAAIKRSQANQRRH 118

Query: 119 PESFHXXXXXXXXXXS---QTASLLKAELKHFILSILDDPIVSRVFAEAGFRSYDIKLAL 175
           PES+H              QT ++LK ELK+FILSILDDPIV+RVF EAGFRS +IKL +
Sbjct: 119 PESYHLQQIHASNNGGGGCQT-TVLKVELKYFILSILDDPIVNRVFGEAGFRSSEIKLDV 177

Query: 176 LQXXXXXXXXXXXXXXXXXXXXXXXXXXLCNI---DPARSGFPFA-LSGSDDNSRRIAEV 231
           L                           LCN+   DP R  FPF+  SG D+NSRRI EV
Sbjct: 178 LH-------PPVTQLSSRFSRGRCPPLFLCNLPNSDPNRE-FPFSGSSGFDENSRRIGEV 229

Query: 232 LARKSKRNPLLMG 244
           L RK K+NPLL+G
Sbjct: 230 LGRKDKKNPLLIG 242


>AT2G40130.2 | Symbols:  | Double Clp-N motif-containing P-loop
           nucleoside triphosphate hydrolases superfamily protein |
           chr2:16766030-16769074 FORWARD LENGTH=910
          Length = 910

 Score =  204 bits (520), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 118/255 (46%), Positives = 150/255 (58%), Gaps = 21/255 (8%)

Query: 1   MPTSVSAARQCLTDEAARALDDAVSVARRRSHAQTTSLHAVSALLSLPTSALRDACARAG 60
           MPT+V+ A+QCLT EA+ AL++AV+VARRR H+QTTSLHA+SALLSLPTS LRDACAR  
Sbjct: 1   MPTAVNVAKQCLTAEASYALEEAVNVARRRGHSQTTSLHAISALLSLPTSVLRDACARVR 60

Query: 61  SCSYSPRLQLRALELSVGVSLDRQTTSKSANDGGDDGPPVSNSLMXXXXXXXXXXXXHPE 120
           + +YSPRLQ +AL+L + VSLDR  +      G DD PPVSNSLM             PE
Sbjct: 61  NSAYSPRLQFKALDLCLSVSLDRIQSGHQL--GSDDSPPVSNSLMAAIKRSQAHQRRLPE 118

Query: 121 SFHXXXXXXXXXXSQTASLLKAELKHFILSILDDPIVSRVFAEAGFRSYDIKLALLQXXX 180
           +F             + S +K EL+  ILSILDDP+VSRVF EAGFRS ++KL++++   
Sbjct: 119 NFRIYQEMSQSQNQNSLSCVKVELRQLILSILDDPVVSRVFGEAGFRSSELKLSIIR--- 175

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXLCNI------DPARSGF--PFALSGSDDNSRRIAEVL 232
                                  LCN+      +P R GF  P      D + RRI+ V 
Sbjct: 176 --------PVPHLLRYSSQQPLFLCNLTGNPEPNPVRWGFTVPSLNFNGDLDYRRISAVF 227

Query: 233 ARKSKRNPLLMGVYA 247
            +   RNPLL+GV A
Sbjct: 228 TKDKGRNPLLVGVSA 242


>AT2G40130.1 | Symbols:  | Double Clp-N motif-containing P-loop
           nucleoside triphosphate hydrolases superfamily protein |
           chr2:16766030-16767821 FORWARD LENGTH=491
          Length = 491

 Score =  204 bits (518), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 118/255 (46%), Positives = 150/255 (58%), Gaps = 21/255 (8%)

Query: 1   MPTSVSAARQCLTDEAARALDDAVSVARRRSHAQTTSLHAVSALLSLPTSALRDACARAG 60
           MPT+V+ A+QCLT EA+ AL++AV+VARRR H+QTTSLHA+SALLSLPTS LRDACAR  
Sbjct: 1   MPTAVNVAKQCLTAEASYALEEAVNVARRRGHSQTTSLHAISALLSLPTSVLRDACARVR 60

Query: 61  SCSYSPRLQLRALELSVGVSLDRQTTSKSANDGGDDGPPVSNSLMXXXXXXXXXXXXHPE 120
           + +YSPRLQ +AL+L + VSLDR  +      G DD PPVSNSLM             PE
Sbjct: 61  NSAYSPRLQFKALDLCLSVSLDRIQSGHQL--GSDDSPPVSNSLMAAIKRSQAHQRRLPE 118

Query: 121 SFHXXXXXXXXXXSQTASLLKAELKHFILSILDDPIVSRVFAEAGFRSYDIKLALLQXXX 180
           +F             + S +K EL+  ILSILDDP+VSRVF EAGFRS ++KL++++   
Sbjct: 119 NFRIYQEMSQSQNQNSLSCVKVELRQLILSILDDPVVSRVFGEAGFRSSELKLSIIR--- 175

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXLCNI------DPARSGF--PFALSGSDDNSRRIAEVL 232
                                  LCN+      +P R GF  P      D + RRI+ V 
Sbjct: 176 --------PVPHLLRYSSQQPLFLCNLTGNPEPNPVRWGFTVPSLNFNGDLDYRRISAVF 227

Query: 233 ARKSKRNPLLMGVYA 247
            +   RNPLL+GV A
Sbjct: 228 TKDKGRNPLLVGVSA 242


>AT5G57710.1 | Symbols:  | Double Clp-N motif-containing P-loop
           nucleoside triphosphate hydrolases superfamily protein |
           chr5:23384794-23388052 FORWARD LENGTH=990
          Length = 990

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 114/263 (43%), Gaps = 44/263 (16%)

Query: 1   MPTSVSAARQCLTDEAARALDDAVSVARRRSHAQTTSLHAVSALLSLPTSALRDACARAG 60
           M   +S  +Q LT EAA  L+ +++ A RR+H QTT LH  + LL+ P   LR AC R+ 
Sbjct: 1   MRAGLSTIQQTLTPEAATVLNQSIAEAARRNHGQTTPLHVAATLLASPAGFLRRACIRSH 60

Query: 61  SCSYSPRLQLRALELSVGVSLDRQTTSKSANDGGDDGPPVSNSLMXXXXXXXXXXXXH-P 119
             S  P LQ RALEL   V+L+R  T+ +    G+D PP+SN+LM              P
Sbjct: 61  PNSSHP-LQCRALELCFSVALERLPTATTTP--GND-PPISNALMAALKRAQAHQRRGCP 116

Query: 120 ESFHXXXXXXXXXXSQTASLLKAELKHFILSILDDPIVSRVFAEAGFRSYDIKLALLQXX 179
           E              Q    +K EL+  I+SILDDP VSRV  EA F S  +K  + Q  
Sbjct: 117 EQ-----------QQQPLLAVKVELEQLIISILDDPSVSRVMREASFSSPAVKATIEQSL 165

Query: 180 XXXXXXXXXXXXXXXXXXXXXXXXLCNIDPARSGFPFALS------------------GS 221
                                     N  P   G P   +                    
Sbjct: 166 NNSVTPTPIPSVSSVG---------LNFRPG-GGGPMTRNSYLNPRLQQNASSVQSGVSK 215

Query: 222 DDNSRRIAEVLARKSKRNPLLMG 244
           +D+  R+ ++L R  K+NP+L+G
Sbjct: 216 NDDVERVMDILGRAKKKNPVLVG 238


>AT3G52490.1 | Symbols:  | Double Clp-N motif-containing P-loop
           nucleoside triphosphate hydrolases superfamily protein |
           chr3:19455850-19458721 REVERSE LENGTH=815
          Length = 815

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 86/175 (49%), Gaps = 21/175 (12%)

Query: 8   ARQCLTDEAARALDDAVSVARRRSHAQTTSLHAVSALLSLPTSALRDACARAGSCSYSPR 67
             Q LT +AA  +  A+ +ARRR HAQ T LH  S +LS PT  LR AC +    S++  
Sbjct: 8   VEQALTADAANVVKQAMGLARRRGHAQVTPLHVASTMLSAPTGLLRTACLQ----SHTHP 63

Query: 68  LQLRALELSVGVSLDRQTTSKSANDGG---DDGPPVSNSLMXXXXXXXXXXXXHPESFHX 124
           LQ RALEL   V+L+R  TS  +   G      P +SN+L             H      
Sbjct: 64  LQCRALELCFNVALNRLPTSTGSPMLGVPTSPFPSISNAL----GAAFKRAQAH------ 113

Query: 125 XXXXXXXXXSQTASLL--KAELKHFILSILDDPIVSRVFAEAGFRSYDIKLALLQ 177
                    SQ   +L  K E++  I+SILDDP VSRV  EAGF S  +K  + Q
Sbjct: 114 --QRRGSIESQQQPILAVKIEVEQLIISILDDPSVSRVMREAGFSSPQVKTKVEQ 166


>AT4G29920.1 | Symbols:  | Double Clp-N motif-containing P-loop
           nucleoside triphosphate hydrolases superfamily protein |
           chr4:14632653-14635885 REVERSE LENGTH=1017
          Length = 1017

 Score = 81.3 bits (199), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 64/181 (35%), Positives = 83/181 (45%), Gaps = 19/181 (10%)

Query: 1   MPTSVSAARQCLTDEAARALDDAVSVARRRSHAQTTSLHAVSALLSLPTSAL-RDACARA 59
           M T      Q LT EAA  L  ++++ARRR H+Q T LH  S LL+   S L R AC ++
Sbjct: 1   MRTGAYTVHQTLTPEAASVLKQSLTLARRRGHSQVTPLHVASTLLTSSRSNLFRRACLKS 60

Query: 60  ------GSCSYSPRLQLRALELSVGVSLDRQTTSKSANDGGDDGPPVSNSLMXXXXXXXX 113
                 G     P L  RALEL   VSL+R  T  + N      P +SN+L+        
Sbjct: 61  NPFTALGRQMAHPSLHCRALELCFNVSLNRLPT--NPNPLFQTQPSLSNALVAALKRA-- 116

Query: 114 XXXXHPESFHXXXXXXXXXXSQTASLL--KAELKHFILSILDDPIVSRVFAEAGFRSYDI 171
                 ++             Q    L  K EL+  ++SILDDP VSRV  EAG  S  +
Sbjct: 117 ------QAHQRRGCVEQQQSQQNQPFLAVKVELEQLVVSILDDPSVSRVMREAGLSSVSV 170

Query: 172 K 172
           K
Sbjct: 171 K 171


>AT5G57130.1 | Symbols:  | Clp amino terminal domain-containing
           protein | chr5:23145291-23149395 FORWARD LENGTH=1028
          Length = 1028

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 85/190 (44%), Gaps = 20/190 (10%)

Query: 1   MPTSVSAARQCLTDEAARALDDAVSVARRRSHAQTTSLHAVSALLSLPTSALRDACAR-- 58
           M T     +Q LT EAA  L  ++++ARRR HAQ T LH  + LLS  TS LR AC +  
Sbjct: 1   MRTGGYTIQQTLTTEAASVLKHSLTLARRRGHAQVTPLHVAATLLSSRTSLLRRACIKSH 60

Query: 59  ---AGSCSYSPR-------------LQLRALELSVGVSLDRQTTSKSANDGGDDGPPVSN 102
              + +  ++P              LQ RALEL   V+L+R  T       G   P ++N
Sbjct: 61  PGFSTNYQFAPSRLQHHHHHNQNHPLQCRALELCFNVALNRLPTVPGPMFHGQ--PSLAN 118

Query: 103 SLMXXXXXXXXXXXXHPESFHXXXXXXXXXXSQTASLLKAELKHFILSILDDPIVSRVFA 162
           +L+                                  +K EL+  ++SILDDP VSRV  
Sbjct: 119 ALVAALKRAQAHQRRGCIEQQQQTQTHPQTQQTQLLAVKVELEQLVISILDDPSVSRVMR 178

Query: 163 EAGFRSYDIK 172
           EAGF S  +K
Sbjct: 179 EAGFNSTAVK 188


>AT4G30350.1 | Symbols:  | Double Clp-N motif-containing P-loop
           nucleoside triphosphate hydrolases superfamily protein |
           chr4:14848031-14850973 FORWARD LENGTH=924
          Length = 924

 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 112/274 (40%), Gaps = 61/274 (22%)

Query: 9   RQCLTDEAARALDDAVSVARRRSHAQTTSLHAVSALLSLPTSALRDACARAGSCSYSPRL 68
           +Q LT EAA  L+ +++ A RR+H  TT LH  + LLS  +  LR AC ++   S  P L
Sbjct: 9   QQTLTPEAATVLNQSIAEATRRNHGHTTPLHVAATLLSSSSGYLRQACIKSHPNSSHP-L 67

Query: 69  QLRALELSVGVSLDR----------QTTSKSANDGGDDGPPVSNSLMXXXXXXXXXXXXH 118
           Q RALEL   V+L+R           ++S S++      P +SN+L              
Sbjct: 68  QCRALELCFSVALERLPTTSTTTTTTSSSSSSSPSQTQEPLLSNALTAALKRAQAHQRRG 127

Query: 119 -PESFHXXXXXXXXXXSQTASLLKAELKHFILSILDDPIVSRVFAEAGFRSYDIKLALLQ 177
            PE              Q    +K EL+  I+SILDDP VSRV  EA F S  +K A+ Q
Sbjct: 128 CPEQ-----------QQQPLLAVKVELEQLIISILDDPSVSRVMREASFSSPAVKSAIEQ 176

Query: 178 XXXXXXXXXXXXXXXXXXXXXXXXXXLCNIDPARSGFPF--------------------- 216
                                        I+P+  GF +                     
Sbjct: 177 SLIGNSVSNSRQTGSPGI-----------INPSAIGFGYRSVPAPVNRNLYLNPRLQQPG 225

Query: 217 ------ALSGSDDNSRRIAEVLARKSKRNPLLMG 244
                  +    D ++R+ E++ R  KRNP+L+G
Sbjct: 226 VGMQSGMMIQRTDEAKRVIEIMIRTRKRNPVLVG 259