Miyakogusa Predicted Gene

Lj0g3v0184609.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0184609.1 tr|B9IB65|B9IB65_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_775321 PE=4
SV=1,30.86,0.0000000000005, ,CUFF.11711.1
         (438 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56870.1 | Symbols:  | unknown protein; Has 204 Blast hits to...    52   8e-07

>AT3G56870.1 | Symbols:  | unknown protein; Has 204 Blast hits to
           201 proteins in 58 species: Archae - 0; Bacteria - 10;
           Metazoa - 72; Fungi - 8; Plants - 41; Viruses - 0; Other
           Eukaryotes - 73 (source: NCBI BLink). |
           chr3:21053077-21055518 FORWARD LENGTH=700
          Length = 700

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 15/144 (10%)

Query: 7   SHLHFIQTIKGGSVTKVLNV-ARGRPRLAFKEVADIYDCILFDKADAKAERSWTDAWGCN 65
           SH+H+I+TIK GS+  V+N+  R +P+L F+++ DIY+       D++   S       +
Sbjct: 12  SHVHYIRTIKDGSIKIVMNMDGRRKPKLKFRQLVDIYNL-----EDSQGVESIPRVVR-D 65

Query: 66  ANDGDDQKIINLDDDGFDNFTLKEMKESCQTSKRKHSQGFDLTEKRKIKVEDMSSLEEDY 125
            ++G D    +  +D F   TL+ +++ C+  KRK     D T +    VE    ++++Y
Sbjct: 66  LDNGSDFTQGSESED-FSMTTLEMIQKQCKERKRKLRNCRDTTTETFSNVE----VKKEY 120

Query: 126 RTNQMAADDSDFIETLSSWRSKLS 149
            T     +  D  E LSSW +K S
Sbjct: 121 VTQD---EGCDIEEPLSSWDTKFS 141