Miyakogusa Predicted Gene

Lj0g3v0184509.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0184509.1 Non Chatacterized Hit- tr|D8TS51|D8TS51_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,39.39,1e-18,DUF3054,Protein of unknown function DUF3054;
seg,NULL,CUFF.11716.1
         (267 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G44920.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   241   3e-64

>AT1G44920.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF3054 (InterPro:IPR021414); Has 246
           Blast hits to 246 proteins in 119 species: Archae - 14;
           Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 45;
           Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
           | chr1:16983229-16984408 REVERSE LENGTH=258
          Length = 258

 Score =  241 bits (616), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 133/255 (52%), Positives = 168/255 (65%), Gaps = 16/255 (6%)

Query: 20  LSSAKFIT-AKSSPFSNPA----PKFITRRSPIRPLHLTLAKAEGNLDXXXXXXXXXXXX 74
           +S+ +FIT +K SPFS+P     P   T RS  R + L L+  +G+++            
Sbjct: 13  VSAVRFITKSKPSPFSSPDSWLLPAPNTHRSRPR-VVLALSNPDGSVNSKPSTSASQIPS 71

Query: 75  XXXXXXXFANDPTVFVGGEDVPLEGVIQFEKPSS--SARIEKWXXXXXXXXXXXXXXXXF 132
                   + D TVFVG ++VPLEGVIQF+KPSS  S+ I KW                F
Sbjct: 72  --------SGDETVFVGQDNVPLEGVIQFDKPSSTSSSNITKWGRVALLAGGDVLALLIF 123

Query: 133 ATIGRFSHGLSILDLETLRTADPFIAGWFLGAYFLGGFGEDGRGMKGLPKGVIATAKSWA 192
           + IGRFSHG  +  L+TL TADPFIAGWFL AYFLGG+ E+GRGMKG  K V+A AKSW 
Sbjct: 124 SAIGRFSHGFPVFSLDTLHTADPFIAGWFLSAYFLGGYAEEGRGMKGKSKAVVAAAKSWI 183

Query: 193 VGIPIGIGIRAATSGHFPNYGFIFVSLGSTAVLLITFRALLYTILPVDSSKKSDVYRRGS 252
           VG P+GI IR+A+SGH P Y F+ V++GSTAVLLI +RALL+++LP +S KK D YR+GS
Sbjct: 184 VGTPLGIIIRSASSGHIPAYSFVLVTMGSTAVLLIGWRALLFSVLPTESKKKDDTYRKGS 243

Query: 253 PFELFELLTSLVRRW 267
            FELFELLTSL+RRW
Sbjct: 244 AFELFELLTSLIRRW 258