Miyakogusa Predicted Gene

Lj0g3v0183689.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0183689.1 tr|A4L9W4|A4L9W4_GOSHI Auxin response factor 3
OS=Gossypium hirsutum GN=ARF3 PE=2 SV=1,42.86,5e-18, ,CUFF.11633.1
         (159 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30080.1 | Symbols: ARF16 | auxin response factor 16 | chr4:1...    62   1e-10

>AT4G30080.1 | Symbols: ARF16 | auxin response factor 16 |
           chr4:14703369-14705564 REVERSE LENGTH=670
          Length = 670

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 89/217 (41%), Gaps = 75/217 (34%)

Query: 1   MRLSQHPDFP-FDGHIPVPTFPLGP---RSPFGCLPESTPAGMQGAR---HAHYGLTLSD 53
           MRL QHPD+      IPVP+FP  P    SP   + ++ P G+QGAR   H +YGL+ SD
Sbjct: 403 MRLPQHPDYNNLINSIPVPSFPSNPLIRSSPLSSVLDNVPVGLQGARHNAHQYYGLSSSD 462

Query: 54  --HHHLNKVHSGLFPAGFPLLNHSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSN 111
             H++LN+                 +   +S  L  +     +E   C L+M G+T  ++
Sbjct: 463 LHHYYLNRPPP----------PPPPSSLQLSPSLGLRNIDTKNEKGFCFLTM-GTTPCND 511

Query: 112 SKKQDDEKRPQLVLFGKTISPSSRFG---------------------------------- 137
           +K     K+  +VLFGK I P  +                                    
Sbjct: 512 TK----SKKSHIVLFGKLILPEEQLSEKGSTDTANIEKTQISSGGSNQNGVAGREFSSSD 567

Query: 138 -----------------GHYEVLMESEDVGQTIDLSL 157
                            GH +V MES+DVG+T+DLS+
Sbjct: 568 EGSPCSKKVHDASGLETGHCKVFMESDDVGRTLDLSV 604