Miyakogusa Predicted Gene

Lj0g3v0183659.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0183659.1 Non Chatacterized Hit- tr|I1LEM1|I1LEM1_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,80.65,2e-19,seg,NULL,CUFF.11634.1
         (72 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71080.1 | Symbols:  | RNA polymerase II transcription elonga...    49   9e-07

>AT1G71080.1 | Symbols:  | RNA polymerase II transcription
           elongation factor | chr1:26809987-26811645 REVERSE
           LENGTH=326
          Length = 326

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 2   PGESTXXXXXXXPSGPALDPRSSPVGRAIKPAPVSRSSFQAVPVEVERIDIGEPENTG 59
           PGES        P    ++ R SPVGRA K   V+RS    VPVEVERI+IG+PEN+ 
Sbjct: 118 PGESAAASQSAVP----VEHRLSPVGRAAKSPQVNRSLLPDVPVEVERIEIGKPENSA 171