Miyakogusa Predicted Gene

Lj0g3v0182159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0182159.1 Non Chatacterized Hit- tr|B9RB21|B9RB21_RICCO
Ataxia telangiectasia mutated, putative OS=Ricinus com,57,0,PREDICTED:
HYPOTHETICAL PROTEIN, PARTIAL,NULL; ATAXIA TELANGIECTASIA MUTATED
(ATM)-RELATED,NULL; seg,CUFF.11609.1
         (1431 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48190.1 | Symbols: ATM, ATATM | ataxia-telangiectasia mutate...  1255   0.0  

>AT3G48190.1 | Symbols: ATM, ATATM | ataxia-telangiectasia mutated |
            chr3:17797628-17828361 FORWARD LENGTH=3845
          Length = 3845

 Score = 1255 bits (3247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/1472 (46%), Positives = 926/1472 (62%), Gaps = 70/1472 (4%)

Query: 1    MVFFLPSAIYALCAGCVPFTQCFEEHPLLYRSFVTES-LDNCHKFEDPKHRCLHEFLDCS 59
            MV  LP+A ++LCAG   F       PL      T S  D C + +D          +CS
Sbjct: 1393 MVQLLPAAAFSLCAG---FKVSL---PLPKEHLPTPSQWDVCEQIDDVDRERNFGLFECS 1446

Query: 60   LEVLTKIDKVSKDEVSQLKILPHVRVPREVSDQLLREIETSFLGALEE-KEKIERHLPDI 118
            +E LT+I   S  ++S  ++   V++P  + D LL +++  FL  + E KEK    L DI
Sbjct: 1447 VEALTRICSNS-SKISGCQVPDVVQLPLVLRDPLLHDMDIYFLSIIPEVKEK--GPLSDI 1503

Query: 119  FLTCSLLSNVLYGSFFTRKL--NVSFCSKLSQYLQVMLNNAVRIIQAD-RDLQAFSSLSF 175
            F+ C+LL + ++GS+ TRK   + SF  K  QYL   L++AV  +     DLQ   SL F
Sbjct: 1504 FMGCALLCHFMHGSYITRKGKGSSSFFLKACQYLLEGLDHAVESVSKSLNDLQRRGSLGF 1563

Query: 176  DPTCNDTGSLASSVHCFLSSPIFNERIDQSLMDTVPLGEVIQVVERLLKAFVNLYEGYSQ 235
                N+ GS+  S+  F  SP+F+ R DQ+L+       VI  +E LL++F  +YE Y++
Sbjct: 1564 GSDFNEKGSIIVSLRSFTQSPVFSNRRDQNLLG-ASYDFVIHSLENLLRSFAKVYEEYTE 1622

Query: 236  YVMNLESGTILRDITSSD-----RIADMELDVNDDSRDVDSLVVGKTNGTGLSSSTENWK 290
            +  N  S T+     + D     RI DM+LD+ +D+++ D +  G     GL  S  NWK
Sbjct: 1623 HAWNTHSDTVPSKSLAPDSPEVGRIVDMDLDLAEDTKERDIIAAGGKAVPGLPVSMGNWK 1682

Query: 291  IGMISLISNFFSASHVLTWDILFNLMEKEYDPKVRGKILYHLCQHPHWSSSAKFVDLVNV 350
            +GM+SLIS F       TWD+L+NL+EKE DPKV   ILYHLC+    +S  K  DLV  
Sbjct: 1683 LGMVSLISCFSPVLQFPTWDVLYNLLEKESDPKVLENILYHLCKLSCLTSIPKVDDLVIF 1742

Query: 351  MNDILIEQVGLKLACGSVXXXXXXX--XXXXXXXDVVDKDKR-DLCIREVETEQCFLSLG 407
            ++ +L  QV +K  C ++                D    +K   L ++E E+ Q F+ LG
Sbjct: 1743 LDGMLSTQVKMKRNCLNIVTALHVLLHTLSSSRRDSSGVEKNCGLSLKEAESFQVFVQLG 1802

Query: 408  NVMHKLSDVDF-DWFGRVKLIDCICYLISLQPQIGQTMIERLLLMLNDIDYRVRLFLARR 466
             +++K+S+     WFGRVKLI+CIC L+ L PQ GQTMIERLLLML+D DYRVR  LAR+
Sbjct: 1803 AMVNKVSEFGLLGWFGRVKLINCICDLVLLNPQTGQTMIERLLLMLSDSDYRVRFVLARQ 1862

Query: 467  IGVLFHTWDGHEELFQDICLNFGVPLVVYSKGKVVNANEVLAAGPQPQPLMETVVITLMH 526
            IG+LF TWDGHE LFQDIC +FG+ LV  SK K+V A +VLA GPQP+  METV+ITLMH
Sbjct: 1863 IGILFQTWDGHEALFQDICSSFGIKLVTSSKEKLVTAKDVLAVGPQPRQKMETVIITLMH 1922

Query: 527  LALHSEKIELQAIFMICVVSAIDPCHRELVHAVLDNLSNELQYMTRTKYLEQLLGSLLFC 586
            LA HSE IELQA+FM+C VSA DPC REL+ A LDNLS +L Y +R KYLE+LLG +LF 
Sbjct: 1923 LAYHSENIELQAVFMMCAVSAKDPCQRELIIAALDNLSAQLHYPSRFKYLEELLGPILFH 1982

Query: 587  WVACSVSLVALVETRHIFVPDAEPGQFLLYCCPWLLPALLLHESSSDLNWVAKVTCQPLT 646
            W+A  VSL  L+ET  +F+P+AEP  F+ +C  WLLPALLLHE  ++L+WVAK+  QP+ 
Sbjct: 1983 WIASGVSLAGLIETSQLFIPNAEPKYFIHFCSHWLLPALLLHEDHTNLDWVAKMAGQPVV 2042

Query: 647  VLMKNHFSSIFSISMALHCTKKAGSERGTRVLQSSILHFGQISENERDKLIKKHMVSIVS 706
            VL+K +F  IFSI M LHC+K +  ++G  VLQ+SIL+ G+ SENERDKLIK++MVSIVS
Sbjct: 2043 VLVKENFVPIFSICMGLHCSKTSECDKGAMVLQNSILYVGETSENERDKLIKQNMVSIVS 2102

Query: 707  YILSLCSCSSEPVVPFFSKTAVSLAIQTIVDGFMDLDDNCTSAAVVDKINIFRPDRVFMF 766
            +ILS  S S EP VP FS+  +SLA+QT+VDGF++  D   +AA+ D+INIFRPDRVFMF
Sbjct: 2103 FILSCASSSPEPPVPTFSRDTISLAVQTVVDGFLENTDYPKNAAITDRINIFRPDRVFMF 2162

Query: 767  LVEIHYKIAAASHCRHRCHRLAGIEVLISVLGQRVAFLSTSNYLFNLIGPLIGCLPLQDQ 826
            + E+HY+++AA H RH  H LA +E L  +LG R    S+ NY+FNL+G  IG   LQDQ
Sbjct: 2163 ITEMHYRMSAACHHRHTRHHLAALEELTILLGHRALVPSSLNYIFNLVGQFIGYPSLQDQ 2222

Query: 827  CCRILSALLLSFKNNVSADISSMLGEQLQFLVSKLVACCIPLKTEXXXXXXXXXXLA-VL 885
            CC I S LL  FK+N + +I S+LG+QLQFLVSKLV CCI  + +          L  +L
Sbjct: 2223 CCSIASCLLDLFKSNPAKEIVSVLGDQLQFLVSKLVTCCIDAEADTKISGAKSSQLVNLL 2282

Query: 886  HMLTVDSDPSMYDYVKELEPFPVFQIFDEIRNFHEELCHTYSIRDHILKF---------- 935
            H L V SD S+ + +++LEP P  + F  IR  H  +C  YS R+H+LK           
Sbjct: 2283 HKLVVSSDSSLNEDIRDLEPLPDLKYFQVIRESHIRICEAYSPRNHLLKVEHSTFLIYIF 2342

Query: 936  --------------------VKKSCYLPPRLLLSSLQALHKKLLIGESFQREGRAESYFK 975
                                 ++S YLPPR L  SLQALH KL+  E  Q +   E+   
Sbjct: 2343 LEILSLSNFLFLSCSTIQQCSRRSNYLPPRFLSRSLQALHNKLIASEVSQEDTNGET--A 2400

Query: 976  DSHWHGDHELVHAVWTLVHICGSDDASGVRELVSDFLCRVGVGNPHNVVFHLPGKSGHIR 1035
            ++ W  D E+V+AVWTLV +  SD+A  +R LVSDFL R+G+ +PH VVFHLPG    + 
Sbjct: 2401 ETFWQSDDEIVNAVWTLVRVSASDEADSMRLLVSDFLSRIGIRDPHTVVFHLPGNLVSMH 2460

Query: 1036 PSKTIDFSSAAENSSNVDSYXXXXXXXXXXXXXXXXXXXXXVEIVDMASQTLRGLLSTER 1095
              +    ++ ++  S  ++                      V+I+D+ SQTLRG+LSTER
Sbjct: 2461 GLQGFGHNTGSKVRSLTENGISDETLITLLNFLKKYLLDDSVKIIDVTSQTLRGILSTER 2520

Query: 1096 GQTSLLSFDSYQRSLIEVHSKGLNIEFVENFLLDLDRKSKVEAISLEKSAVWVTDSKSFE 1155
            GQ +L SFDS +R+LIEVH +G+N++ VE  LLD  ++ K E  SLE   VW TD+K+F+
Sbjct: 2521 GQQALSSFDSCERALIEVHGRGVNLDIVEKILLDSQKQFKAEKFSLETPEVWSTDNKNFD 2580

Query: 1156 TWICPLVYSLIVYCNDVILRLCQDMVLCKAEAAELLLPSIFVNIAARKDLEIDLHKLISV 1215
             WIC LVY +I  C DV +RLCQ++ L KAE +ELL PS+ V++A R  ++I+LH LI+ 
Sbjct: 2581 RWICQLVYCMIALCEDVPIRLCQNIALLKAEISELLFPSVVVSLAGRIGMDINLHDLITS 2640

Query: 1216 QLKEHIFTESNKLIKSIQVILNCLNELRVCHVTERSSLV-PSKHEIXXXXXXXXXXXXXX 1274
            Q+KEHIFT+SNKL KS QV+LN LNELR+C+V ERS     +K E               
Sbjct: 2641 QVKEHIFTDSNKLTKSKQVMLNTLNELRMCYVLERSIFSGQTKRE-----------KNSR 2689

Query: 1275 XXXXXAKARHSAVVSSALEKS-PSSWDKVYWLSIDYLLVAKSAVSCGSYFTSMMYVEHWC 1333
                 AK R     S+ +  S  ++W+KVYWLSIDYL+VA SAV CG+Y T+ MYVE+WC
Sbjct: 2690 SCSTAAKIRDVESGSNGMAASITTNWEKVYWLSIDYLVVAGSAVVCGAYLTASMYVEYWC 2749

Query: 1334 EEQFKTMTTGGPDFSHNEILPDHIEILVSAVTRINEPDSLYGILQSHKLTSQITMLEHEG 1393
            EE+F  ++ G PDFS+++ LPDH+EILVSA+TRINEPDSLYG++ S+KL++QI   EHEG
Sbjct: 2750 EEKFGNLSLGDPDFSYHDKLPDHVEILVSAITRINEPDSLYGVIHSNKLSAQIITFEHEG 2809

Query: 1394 NWGKALEFYDLQVQSGVSLRKVDSSRSLSLEQ 1425
            NW +ALE+YDLQ +S   +     S +L +EQ
Sbjct: 2810 NWTRALEYYDLQARSQKMVVPSSLSENLEVEQ 2841